Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq244 389 5e-103 seq1825 122 1e-22 >seq244 Length=4003 Score = 389 bits (430), Expect = 5e-103 Identities = 1205/1847 (65%), Gaps = 36/1847 (2%) Strand=Plus/Plus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 ||||| | ||||||||| || || || ||||| ||| || || || ||||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957 || | ||| | | | || || || || |||||||| | |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 53018 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATAGATCCACCATCT 53074 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 53075 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 53134 ||| ||| | ||||||| ||||| ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194 || || || || | ||| ||||| |||| | || | ||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 || || ||||| | | | ||||| ||||| ||||||| || || ||||| |||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 53312 || || ||||| | || | || ||| ||||| | ||||| || || ||| || Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACC--ATGTTGAGCAATTTTTTCCTT--GAGCTT 1591 Query 53313 --CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT 53370 |||||| ||| || || | || || ||| | | ||| || Sbjct 1592 AACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTT 1651 Query 53371 ACTGGCGTACGAT--CCTACATATGTATCGTA-TGGTCCTTCCTTCT-CAGCTAGTTCAC 53426 | | | || || ||| || || || | |||| |||| |||| || || | Sbjct 1652 G--GACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTT--TTCTTCAGCCAGCTCGC 1707 Query 53427 AACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTG 53486 || || ||||| ||| ||| ||| || ||||| || || | |||| || | | | Sbjct 1708 AAGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAG 1767 Query 53487 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 53546 |||| | ||| || | | | || | | ||||| | |||||| | |||||||||| Sbjct 1768 CTTCAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACAC 1827 Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 53606 | | ||||||||| | || | ||| || ||| ||||||||| | ||||||||| | Sbjct 1828 CTAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGT 1887 Query 53607 TAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 | ||||| || || ||||| | |||||| |||||||| || ||||| | || || Sbjct 1888 TGATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCT 1947 Query 53667 GAAAATCAAATTGTCCA---TCTATTACAAACATGTTCAATGCAATAGATGCCAGATTAC 53723 | || || | | || | | ||||| || ||| ||||| || |||| |||| Sbjct 1948 GGAAGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTAC 2007 Query 53724 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 53783 | || || || |||| || | |||| | || || || || | |||||||||| Sbjct 2008 AGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACT 2067 Query 53784 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 53843 |||| || || || ||||| || ||||||||| ||||||| ||||||||||| || |||| Sbjct 2068 TGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGA 2127 Query 53844 ATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTA 53903 |||| |||| |||||| | || | ||| | || || | ||| | | ||||| | Sbjct 2128 ATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGA 2187 Query 53904 TTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTC 53961 || | | | || |||| ||| |||| || | || ||| |||| || || Sbjct 2188 TTGTT--TCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATC 2245 Query 53962 TCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 54020 ||||| || || | || ||||||| ||||| ||||| | ||| ||||| || || | Sbjct 2246 ACCCCATAC-TTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCAT 2304 Query 54021 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTG 54079 || || || | ||| ||||||||||| | ||||||||| ||| || | || | Sbjct 2305 TGTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGA 2363 Query 54080 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 54139 | |||| ||| || || || |||||| | | ||| | ||| | | |||||||| Sbjct 2364 GCTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGG 2423 Query 54140 TGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 54199 ||||| ||||||||||| || | | | || || || ||||| || |||||||| | Sbjct 2424 TGCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACA 2483 Query 54200 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 54259 || | ||| || || || | || | |||||| || | || ||||| || ||| || Sbjct 2484 TAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTA 2543 Query 54260 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCT 54319 || || | ||||| ||| |||||||||| || | | ||| || || || Sbjct 2544 GTACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCA 2603 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || | ||||| ||| || || |||||| || || ||||| || || ||| |||| Sbjct 2604 GCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCA 2663 Query 54380 TCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438 ||| |||| || || || || || ||||||||| ||||| ||| || ||||| || Sbjct 2664 TCCTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAA 2722 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 | |||||| || || ||||| | |||||| | || ||||| ||||| || || Sbjct 2723 AAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGC 2782 Query 54499 TGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 54556 | || |||| | ||| |||||| || || || |||||||| | || || || ||| Sbjct 2783 GGCATCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGT 2840 Query 54557 CTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCA 54616 |||||| | | ||| || || || |||||||| || || | || || |||||| Sbjct 2841 CTTTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCA 2900 Query 54617 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || | |||||| || || || || || || || | ||||| || Sbjct 2901 AAGAAATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAG 2947 >seq1825 Length=31147 Score = 122 bits (134), Expect = 1e-22 Identities = 381/586 (65%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||||||||||| || ||||||| | | || | ||| | | | ||| || Sbjct 9281 CATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATCAGC 9340 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 ||| ||||||| | || || | || | | | |||| |||||| ||||| | ||| Sbjct 9341 ACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTA 9400 Query 54157 TATGGTCATAACT-CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 |||| || | | ||| || || || || ||| || | | ||| |||| || Sbjct 9401 CATGG-CAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTCAT 9459 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 || | || | | ||| || | |||||||||||||| ||||||||| || | || || Sbjct 9460 TAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTAAG 9519 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 ||| | |||| || || | ||| | ||| | || || || ||||||||| Sbjct 9520 AACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACCAGCAGCTTTAGAGATAC 9579 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 || || | |||| || |||||||| || || |||||||| || |||| | | | Sbjct 9580 GAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGACAA 9639 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | |||||||| || | ||| | | || |||||||| || | ||| || | ||| | Sbjct 9640 GGAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCAT 9699 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || || |||| || | |||| ||| |||| || || |||| ||| || Sbjct 9700 GAGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATC---TT 9756 Query 54516 G---ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | ||| || || | || |||||||| | ||||| ||||| | |||||| ||||| Sbjct 9757 GACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTAC 9816 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 ||| || || | | ||| |||||| || || |||||||| Sbjct 9817 CGTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700715842720