Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2078 86.0 5e-12 seq1425 86.0 5e-12 seq2232 84.2 2e-11 >seq2078 Length=27221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28957 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 29016 |||| |||||||| ||| |||| || | || || |||||||||||| ||| ||| Sbjct 1517 TAAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAAT 1458 Query 29017 CCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 29076 || | || | | | | |||||||||| ||| || || |||||| | || || Sbjct 1457 CCTCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAG 1398 Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATT 29136 |||||||| | | || || || || || ||||| |||||| | || | | || | Sbjct 1397 ATCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGACT 1338 Query 29137 ACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||| || ||||| |||||||| || || ||||| Sbjct 1337 ACAACATCCAGAAAGAATCTACACTACATCTGGTG 1303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| | || |||||||| || || ||| ||| || | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | |||||||| ||| |||||||||||| | || ||| ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || | ||||| ||||| ||||||||| | |||||| || |||| | || |||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTAT--CAGACTACA 1107 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || ||||| |||||||| || || ||||| | || | || ||||| Sbjct 1106 ACATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTCCGTGGAGG 1058 >seq1425 Length=32788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 |||||||| ||| || || |||||| | ||| ||| |||||| | ||||||||||| Sbjct 31331 AAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAACAACGTCTTATCTTTGCT 31272 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || || ||| |||||||| || | | || ||||| || || ||||||||||| Sbjct 31271 GGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGACTACAACATCCAAAAGGAATCTACC 31212 Query 29160 CTTCACATGGT 29170 |||||| |||| Sbjct 31211 CTTCACTTGGT 31201 >seq2232 Length=20840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 |||||||| || || || |||||| | ||| ||| |||||| | ||||||||||| Sbjct 435 AAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAACAACGTCTTATCTTTGCT 376 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||| | |||||| | || | | || |||||||| || || |||||||| Sbjct 375 GGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATCCAAAAAGAATCTACC 316 Query 29160 CTTCACATGGT 29170 |||||| |||| Sbjct 315 CTTCACTTGGT 305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 |||||||| || || || |||||| | ||| ||| |||||| | ||||||||||| Sbjct 891 AAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAACAACGTCTTATCTTTGCT 832 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||| | |||||| | || | | || |||||||| || || |||||||| Sbjct 831 GGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATCCAAAAAGAATCTACC 772 Query 29160 CTTCACATGGT 29170 |||||| |||| Sbjct 771 CTTCACTTGGT 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428321309949170