Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1425 98.7 8e-16 seq2232 96.9 3e-15 seq2078 87.8 1e-12 >seq1425 Length=32788 Score = 98.7 bits (108), Expect = 8e-16 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || |||||||||| ||| || || |||||| | ||| ||| |||||| | ||||||| Sbjct 31336 ATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAACAACGTCTTATCT 31277 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| || || |||||||||||| || | | || ||||| || |||||||||| Sbjct 31276 TTGCTGGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGACTACAACATCCAAAAGGAAT 31217 Query 25228 CTACTCTTCACATGGT 25243 |||| |||||| |||| Sbjct 31216 CTACCCTTCACTTGGT 31201 >seq2232 Length=20840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 |||||||||| || || || |||||| | ||| ||| |||||| | |||||||||| Sbjct 437 TCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAACAACGTCTTATCTTTG 378 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || |||||||| |||||| | || | | || |||||||| ||||| ||||||| Sbjct 377 CTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATCCAAAAAGAATCTA 318 Query 25231 CTCTTCACATGGT 25243 | |||||| |||| Sbjct 317 CCCTTCACTTGGT 305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 |||||||||| || || || |||||| | ||| ||| |||||| | |||||||||| Sbjct 893 TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAACAACGTCTTATCTTTG 834 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || |||||||| |||||| | || | | || |||||||| ||||| ||||||| Sbjct 833 CTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATCCAAAAAGAATCTA 774 Query 25231 CTCTTCACATGGT 25243 | |||||| |||| Sbjct 773 CCCTTCACTTGGT 761 >seq2078 Length=27221 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || ||| | || |||||||| || || ||| ||| || | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | |||||||||| ||| |||||||||||| | || ||| ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || | ||||| ||||| ||||||||||| |||||| || |||| | || |||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTAT--CAGACTACA 1107 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || || || |||||||| || || ||||| | || | || ||||| Sbjct 1106 ACATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTCCGTGGAGG 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410782711466996