Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2232 111 2e-19 seq2078 98.7 1e-15 seq2381 95.1 1e-14 >seq2232 Length=20840 Score = 111 bits (122), Expect = 2e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||||||||||||| | || || ||| | | Sbjct 741 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCT 682 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | ||| | ||| |||| || | ||||| || ||||| || | ||||| Sbjct 681 GATTCTATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACCAA 622 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || || ||| |||| |||| || | ||| ||||||||| Sbjct 621 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACAAC 562 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 561 ATCCAGAAGGAGTCCACTCTTCA 539 >seq2078 Length=27221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| |||||||| ||||| | || |||||| || | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||||| ||||| |||| |||| || ||||| || || || | ||||| Sbjct 1224 GATTCTATTGAAAACG-TCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCA 1166 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | || |||||||| | || || | ||| | || |||||||| Sbjct 1165 ACAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAA 1106 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||| || | || || ||||| ||| Sbjct 1105 CATCCAGAAAGAATCTACACTACATCTGGTG 1075 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| || |||||||| ||| | || || ||| | Sbjct 1516 AAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATC 1457 Query 40746 CACCGA--CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | || || || ||||| | ||| |||| |||| ||||| || || || || | Sbjct 1456 CTCTGATTCAAT-TGAAAACGTT-AAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCA 1399 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || || ||||| | || | ||| || || || || || || | ||| | | ||| Sbjct 1398 GATCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGAC 1339 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||| || | || || ||||| ||| Sbjct 1338 TACAACATCCAGAAAGAATCTACACTACATCTGGTG 1303 >seq2381 Length=15399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 175/256 (68%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| | || ||||| || || || || |||| ||||| || ||||| | Sbjct 11148 TTGTTTGATGCTATCGAAACCATTCCCTGTATCAAGCGTAAGGCAGATTGGGCATTCAAG 11089 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||| | || | || | | || | ||||| |||| ||||| || || ||||| Sbjct 11088 TGGATCTCTGGTAACGA---CTCTTTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAA 11032 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || ||||||| || || || ||| | || || ||||||||||| || || |||||| Sbjct 11031 GGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATG 10972 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || |||||||| ||||| || |||| | || || ||||| || |||||| Sbjct 10971 CCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTT 10912 Query 117185 GCCTGTTTGCTGTTCA 117200 || ||| | |||||| Sbjct 10911 GCTTGTCTCTTGTTCA 10896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201077164640