Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2193 192 4e-44 >seq2193 Length=22042 Score = 192 bits (212), Expect = 4e-44 Identities = 410/610 (67%), Gaps = 43/610 (7%) Strand=Plus/Plus Query 97063 ACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACA 97122 ||||| | || | ||| || | ||| || |||||||||||||| | |||||||| ||| Sbjct 3004 ACATACACATGTGTATCGCCCATAGTATGTATAAATTCTCCAGGCTCCAAATCAGTTACA 3063 Query 97123 TGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC 97182 ||||| ||||| | |||||| |||| ||| ||||||||||| ||||| ||||||||| Sbjct 3064 TGGGCAATCATTCGAGTTAAAAGAGCATAAGAGGCAATGTTAAATGGCACACCTAGTCCC 3123 Query 97183 ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA---TCAC----------- 97228 |||||| ||||||||||||||| |||||| | ||| || |||| Sbjct 3124 ATATCACATGATCTTTGATATAATACACAGGACAACTTAGCAGGCTCACCATTGATAGGT 3183 Query 97229 ----ACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 | ||||| || |||| ||| |||||| || || || ||||| | |||| ||| Sbjct 3184 GTAGAGACATAGAATTGACAGAATGAATGACAAGGAGGTAAAGCCATGATAGGAATATCA 3243 Query 97285 AAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTA 97344 |||||| |||| || | || | | |||||||||||| | | || |||| | Sbjct 3244 GCAGGATTCCAGGCACTCAAAATAATACGGCGATCGGTTGGGTTGTTCTTAATCGTATCA 3303 Query 97345 ATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATA 97403 || | |||| | ||||||||||||| || ||||| ||| | | || ||| Sbjct 3304 ATAACTTGCTGAAGCTGATCAACGCCTTGACCTGTATAATCTGT-ATCGCAATCTACATA 3362 Query 97404 TTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCT 97463 || || || || || | |||||| || ||||| |||||||| || || ||||| | Sbjct 3363 TTTCGCACCGAAGTGACGCCATTGAAAACCATATACAGGTCCGAGATCACCTTCACGACG 3422 Query 97464 ATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA------- 97516 ||| | ||||| ||| | ||| | ||| || || | ||||| | Sbjct 3423 ATCGGTCAGACCAATGCGATCAAGATATTCACGAGAGCCGTTGCCGTCCCAGATCTTGAC 3482 Query 97517 --TGTGCACAC-CAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 || | ||| |||||||| | || |||| |||| |||| |||||||| | Sbjct 3483 GTTGCGATCACTCAGATGCTTCGAG---TTTG-TGTC------GCCTCGAATAAACCAAA 3532 Query 97574 ACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA---AT 97630 |||||||| | |||||||| | ||||| || || || || |||||||| || || Sbjct 3533 GTAATTCTTCAAGCACACCTCTGTAGAATACCCTTTTTGTGGTCAAGAGAGGGAAGATAT 3592 Query 97631 CCTTTTCTAA 97640 | |||| ||| Sbjct 3593 CATTTTTTAA 3602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346772106825980