Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2193 154 2e-32 seq2078 145 1e-29 seq2232 107 3e-18 >seq2193 Length=22042 Score = 154 bits (170), Expect = 2e-32 Identities = 328/485 (68%), Gaps = 21/485 (4%) Strand=Plus/Plus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 ||||| |||||| | || ||||| | ||| | || | ||||| || | || | Sbjct 2935 TTTATCTTTAATGTAGGGAATGGTCTAGGTTCTCTTTGGATTTGTTGCTTGAGCCCTTCC 2994 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 | || | |||||| | ||||| || || ||| |||| |||||||| || | ||| Sbjct 2995 AAGTGGTCAACATACACATGTGTATCGCCCATAGTATGTATAAATTCTCCAGGCTCCAAA 3054 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 | ||||| ||| |||||||| ||| || | | |||| |||| |||||||| ||| Sbjct 3055 TCAGTTACATGGGCAATCATTCGAGTTAAAAGAGCATAAGAGGCAATGTTAAATGGCACA 3114 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGT-AAGATAT-----TTATTA 205554 |||| ||||||||| |||||||||||| | | ||| | || || | | | Sbjct 3115 CCTAGTCCCATATCACATGATCTTTGATATAATACACAGGACAACTTAGCAGGCTCACCA 3174 Query 205555 TTAATT---------ACATGAAATTGTACAAAAC-AATGACAAGGTGGTATAACCATATT 205604 || || |||| ||||| ||| || |||||||||| |||| | |||| | Sbjct 3175 TTGATAGGTGTAGAGACATAGAATTG-ACAGAATGAATGACAAGGAGGTAAAGCCATGAT 3233 Query 205605 TTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTA--GATTCAGGtttattt 205662 || ||| |||||||||||| | || || ||| | | | || || || || Sbjct 3234 AGGAATATCAGCAGGATTCCAGGCACTCAAAATAATACGGCGATCGGTT--GGGTTGTTC 3291 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722 || || ||| |||| || | ||||||| |||||| |||||||| |||||| Sbjct 3292 TTAATCGTATCAATAACTTGCTGAAGCTGATCAACGCCTTGACCTGTATAATCTGTATCG 3351 Query 205723 ATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCA 205782 ||| | |||||| ||||| || |||||||||||||||||||| || || || | |||| Sbjct 3352 CAATCTACATATTTCGCACCGAAGTGACGCCATTGAAAACCATATACAGGTCCGAGATCA 3411 Query 205783 CCTTC 205787 ||||| Sbjct 3412 CCTTC 3416 >seq2078 Length=27221 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||||||||| || || |||| | ||| | | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| || | || || || |||||||||||||||||||| ||||| || ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || ||||||||||| ||| |||| | || ||| || || Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || |||||||| || | ||| |||| | ||| | || || ||| Sbjct 1104 ATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTCCGTGGAGGT 1057 >seq2232 Length=20840 Score = 107 bits (118), Expect = 3e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| ||||| ||| | || | ||| | Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || || || || ||||| || |||||||| || || || ||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || ||||||||||| ||| | || | | || || ||| Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||||||||| || | || |||||| | ||| | || |||||| Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGT 286 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || | ||| | Sbjct 969 ATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCCTCC 910 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || || || || ||||| || |||||||| || || || ||| Sbjct 909 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 850 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || ||||||||||| ||| | || | | || || ||| Sbjct 849 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 790 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || |||||| | ||| | || |||||||| Sbjct 789 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGTAT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755429426835200