Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2232 143 2e-29 seq2078 116 2e-21 >seq2232 Length=20840 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| ||||||||||| || || |||| |||| Sbjct 530 AGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCT 589 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||||||||| || || ||||| || | || |||||||| Sbjct 590 TCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCT 649 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||||| || | || ||||| | ||||| || || | ||||||||| Sbjct 650 TGGATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTT 709 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || |||||||| ||||| Sbjct 710 TTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 741 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| |||||| || || |||||||| || || |||| | || Sbjct 302 AGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCT 361 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || || || || || || || || || || ||||| ||| | | |||||||| Sbjct 362 TCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCT 421 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | | | || || |||| |||||||| |||| || || || Sbjct 422 TGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTC 481 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || || || |||||||| Sbjct 482 TTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| |||||| || || |||||||| || || |||| | || Sbjct 758 AGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCT 817 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || || || || || || || || || || ||||| ||| | | |||||||| Sbjct 818 TCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCT 877 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | | | || || |||| |||||||| |||| |||||||| Sbjct 878 TGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTC 937 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || || || ||||| Sbjct 938 TTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 >seq2078 Length=27221 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| |||| ||| ||||||||| ||||||||||| || || || | || Sbjct 1073 AGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCT 1132 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || || ||||| || ||||| || ||||| ||||| || | | || || || Sbjct 1133 TCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCT 1192 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | | | || ||||| | |||||||| || | ||||| ||| Sbjct 1193 TGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTT 1252 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||||||||| ||||| Sbjct 1253 TTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| |||| ||| ||||||||| ||||||||||| || | ||| | || Sbjct 1301 AGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATCT 1360 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| ||||||||||| | || || || || || | | |||||||| Sbjct 1361 TCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTCT 1420 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | | | || ||||| | ||||| || || | || |||||| Sbjct 1421 TGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGTT 1480 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || || || ||||| Sbjct 1481 TTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060920043840