Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2381 188 7e-43 >seq2381 Length=15399 Score = 188 bits (208), Expect = 7e-43 Identities = 466/701 (66%), Gaps = 7/701 (1%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||| || ||| ||| | ||| |||||||| || || || |||| | ||||| | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT-A 16064 ||| |||||||| || || | | | ||| ||||| | || || |||| || | Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCC-AAGGGCAACCATCA 10736 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 | | ||| || || ||||| || || || ||| | | | |||||| || || || | Sbjct 10737 AACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGT 10796 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || || || | || ||| ||| ||| || |||| || || Sbjct 10797 TGACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATG- 10855 Query 16185 CTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAA 16243 ||||| ||| | | | ||| || | ||| | |||| | ||||||||| Sbjct 10856 CTCTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAG 10915 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 ||| || | ||||| || | || || | ||||| || || || | ||| ||||| Sbjct 10916 TCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATG 10975 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 || || || || || | ||| || |||| ||||||||||||||| ||||| |||||||| Sbjct 10976 AGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCG 11035 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttt 16423 || || ||||| ||||||||||||||| | | | | |||| ||||| || Sbjct 11036 ACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAG---AGTCGTTACCAGAGATCCACTTG 11092 Query 16424 ttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 ||||||| ||| || | || | |||| ||| | || || |||| ||| || Sbjct 11093 AATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATC 11152 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 | ||||||| ||||| || || || || || | ||||| || |||| | ||| Sbjct 11153 TCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGG 11212 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 || ||||| || || || || |||||||| || ||| | ||||| | || | ||||||| Sbjct 11213 ATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCA 11272 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 | || ||| | |||||||| || |||| ||||| Sbjct 11273 TCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATC 11313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462495731140400