Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq244 86.0 1e-11 >seq244 Length=4003 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 248482 ATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAG 248541 || || ||||||||||||||||| || |||| || || | ||| || ||| | || Sbjct 3274 ATTAACAAGCTCTGTTATGGTCTTGACATGAACTATGTTGACCCTGTTGCTATCACTCAA 3215 Query 248542 AAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCG 248601 || || ||||| ||||| || || || ||||| | ||||| |||| | | ||||| Sbjct 3214 AAGGTCATTTCAGGCGTTTATCAAGGTGTTACAACCATTGAACTTGACAACCTTGCTGCC 3155 Query 248602 GAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGC 248651 ||||| || || |||||| | | | | ||||| || ||| | || |||| Sbjct 3154 GAGACCGCTGCTTACATGACTACTACTCACCCAGATTACGCTTTGTTGGC 3105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073727686023552