Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2381 187 2e-42 >seq2381 Length=15399 Score = 187 bits (206), Expect = 2e-42 Identities = 545/837 (65%), Gaps = 12/837 (1%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||| || ||| ||| | || ||||||||||| || || |||| || || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| |||||||| || || || | | | | |||||| | || || | | | || Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 | ||| || | ||| ||||| ||||| |||| | | | |||||||| || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | || || || ||||||| ||| ||| |||||||| || || | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATGCT 10857 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | ||| ||| ||||||| | || || || | || | | ||| ||||| || Sbjct 10858 CTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGTC 10917 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 | ||||| || ||||| | || ||||||||||| || || || || || ||||| | Sbjct 10918 AGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGAG 10977 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 || || || || | ||| || || | || ||||| || || ||||| || || || || Sbjct 10978 ACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGAC 11037 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 |||||||| || | ||||| || |||| || | || || ||||| || Sbjct 11038 AGCAGCAAAGGCAACCAATCGCTCAGCAAAAGA---GTCGTTACCAGAGATCCACTTGAA 11094 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 ||||| || | || || ||| | || ||||| ||||||| ||| || || Sbjct 11095 TGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCTC 11154 Query 14455 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 ||| |||| | || | ||||| || ||||| | || || || |||| | || || Sbjct 11155 CTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGAT 11214 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574 ||| || ||||| || || |||||||| |||||| | ||||| | | ||| || Sbjct 11215 GTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCATC 11274 Query 14575 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14634 | || ||| |||| |||||||| |||| ||||||| | ||||| || ||||| Sbjct 11275 ACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGAAGGCCAA 11334 Query 14635 TATGTTTTTAATAAAGTATTGCTCTTCATTGCTG---AGTTTTTT---CCAATCGGCTAA 14688 | || ||| || | ||| |||||| | ||| || ||||||| | Sbjct 11335 GACACGAGAGATGAAGAATCG---TTCGTTGCTGTTCATTTTGTTCTCCCAATCGTGTTG 11391 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 ||||| || | || | ||| ||| | |||||||| ||| |||| ||||| || Sbjct 11392 GTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTGTA 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482328633493520