Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2078 116 3e-21 seq2232 100 2e-16 seq1425 93.3 3e-14 >seq2078 Length=27221 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1117 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | | || |||||| ||||||||||| ||| | ||||| | ||||| || || Sbjct 1118 AGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGA 1177 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | ||||||||| | | ||| || ||| || ||| | Sbjct 1178 ATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACT 1237 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| ||||||| || | ||| || ||||| |||||||| Sbjct 1238 TCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || ||||| |||||||| || ||||||||||| | | | | ||| Sbjct 1300 AAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATC 1359 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||| || || || | || | | ||||||||| || | |||||||| || Sbjct 1360 TTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTC 1419 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||||| || | | ||| | ||| || || ||||| ||| ||| | Sbjct 1420 TTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGT 1479 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 ||| || || | || || || ||||||||||| |||||| Sbjct 1480 TTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTTAAA 1519 >seq2232 Length=20840 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || ||||||||||| || |||||||| | Sbjct 743 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAA 802 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | | | |||||| |||||||| || ||| ||||||| | |||||| || ||| Sbjct 803 AGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGG 862 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | ||||||||| | ||| | ||| || ||| | Sbjct 863 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACT 922 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | || || || | || || || ||||||||||| || Sbjct 923 TCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATGTT 972 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150 ||| || || || || || | ||| |||| |||||| || ||||||||||| || |||| Sbjct 279 TTTATTGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGT 338 Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210 |||| | | | | |||||| |||||||| || ||| ||||||| | |||||| | Sbjct 339 AGTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGT 398 Query 18211 CCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGG 18270 | ||| | |||||||| || || | ||||||||| | ||| | ||| || Sbjct 399 CTGGGGGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGG 458 Query 18271 GCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||| | || || | ||||| || | || || || ||||| ||||| Sbjct 459 ATTCGACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 >seq1425 Length=32788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||| ||||| ||||||||||| | | | || |||| Sbjct 31198 AGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGAAAGAGAACGACCATCT 31257 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || ||| ||||||| | |||||| || ||| | |||||||| || Sbjct 31258 TCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 31317 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCA 18266 ||| | ||||||||| | ||| |||||| Sbjct 31318 TGAATCTTTTGCTTGACATTGTCAATGGTGTCA 31350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379330990160430