Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq244 271 7e-68 seq2232 120 3e-22 seq2078 107 2e-18 seq1825 102 7e-17 >seq244 Length=4003 Score = 271 bits (300), Expect = 7e-68 Identities = 1210/1896 (64%), Gaps = 43/1896 (2%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || ||||||| ||||| | | || || || || | ||| ||||| || ||| Sbjct 1080 TCGACGGTAAACTTGATGGCATCAACAGCAGGACGAGTACGCAAATAGTACATACCGGTC 1139 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 || |||||| | | ||| | || || || || |||||||| ||| | | || Sbjct 1140 TTGAGACCCTTTTGCCAACCATAGAAGTGCATACTTGTCAATTTACCAAAGTTAGGTTCA 1199 Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288 | ||| | | ||| || ||||| ||||| || | || || ||||| || |||||| Sbjct 1200 GCAATGAAGATATTCAAACTTTGACTTTGATCAATGTAAGCACCACGATCAGCAGCCATA 1259 Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAAC 22348 | | |||||||||| || |||||| || || ||||| | | | | | || | Sbjct 1260 TCAACCAATGTACGCTGACTCAATTCCCAGACTGTTTTGTAGATGTCCTTCAACTTTTGA 1319 Query 22349 GGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 || || | || | || || || || || ||||||| || || | | Sbjct 1320 GGAATACCTGGAATGTTTTGCACTGAACCACCATCAGACATGATCATGTTCTTGACATCA 1379 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACCACTTGAA 22466 |||||||||||||| || | |||||| || | || ||| |||| || | ||| | Sbjct 1380 TCGTTCCACAAACCCATTTCAACCAAATCCTTCAAGAGCCATG--GGTTGACAATTTGGA 1437 Query 22467 ACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 | ||||| | ||||| | || || || | |||||| ||| | ||||||||| ||||| Sbjct 1438 ATTCGCCAG-CAAGAACACGACGAGTATAGAGGTTGGAGGTGTAAGGTTCGAAACATTCA 1496 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||| |||| || |||| ||| ||||| || ||||| || || | || || ||||| Sbjct 1497 TTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATAGGAGCAACCAAGAGTGAGTTA 1556 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGC 22645 | | || || | | |||||| ||||||| | ||| ||||| || || | || Sbjct 1557 CGAACACCATGTTGAGCAATTTTTTCCTTGAGCTTAACCCAATCCCAGAGGTCAGTGGGA 1616 Query 22646 GTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705 || ||||| ||||||||| |||||||| || || | | || ||||| || Sbjct 1617 GTGACATT---CCACATATCATATTGCAATACACCCTTGGACACAGGACTGCCGGGATAG 1673 Query 22706 GTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATAT 22765 ||||| || ||| | | | || || ||||| || || || || ||| ||| Sbjct 1674 GTTTCATAGTAACCCTTTTCTTCAGCCAGCTCGCAAGAAGCTTCTAAAGCAGCGTGATAG 1733 Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCAT 22821 || || || || |||| | || | || || || || ||| | | || Sbjct 1734 ATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGCTTCAGGAGAA----TCGAAAG-CAA 1788 Query 22822 ACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 || ||| | || || | ||| || | ||| ||||| |||| |||||| || |||| Sbjct 1789 ACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACCTAGACCGATAGGGCGGTGAC 1848 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 | || || || || || | |||||| | || |||||| | | |||| Sbjct 1849 GCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTTGATATCGATGATCTTATTCA 1908 Query 22941 AGTTTCTGGTCACAATTTT--CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-CG 22997 ||||||| || | | ||| || || | ||||||||| | || Sbjct 1909 AGTTTCTAGTGATTACTTTAACGACATCATGCAACTTC--TGGAAGTCGTAACTTTCACG 1966 Query 22998 ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 ||| |||||||| || | || || || || | || || || || || || || Sbjct 1967 GTTG-ACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAGACAGCAACTTCATCAG 2025 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 | | ||| || |||||||| ||||| | || |||||||| || || ||||| || Sbjct 2026 GGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTGATAGTACCCAAGTTTT 2085 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||| || |||| || || | |||||| ||||||||| | || | || || || Sbjct 2086 GCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAATGGATTACCGGTTTCAG 2145 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTG 23236 || | || | ||| || ||||| | || || | | || | | | ||| Sbjct 2146 TTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATT-GTTTCTCTAGCTCTG 2204 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||||| | || ||||||| ||| || || ||||||| |||| | || || Sbjct 2205 CCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATCACCCCATACTTCACAAAGT 2264 Query 23297 CCGGGCGATTGCATCGGACACATGA--GACTCCACATTGAGTCATTTTCA---ACGCGTC 23351 || || | || | ||||| | | ||| |||| | |||| ||| || || Sbjct 2265 CCAGGAGCTTCATTAGGACAGAACAAGGAC----CATTCAC-CATTGTCACGTACACGCT 2319 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 ||| || ||||| |||| ||| ||||| ||||||| || || || | | || |||| Sbjct 2320 CCATGAAGAGATCAGGTACCCAAAGAGCATAGAACAAGTCACGAGCTCTAATTTCATCTT 2379 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAA-AAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 | || ||||||| ||||||| || ||||| || | || | ||||| || || | | Sbjct 2380 TACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAA-ATATCAGGGTGCCATGGTTCCAAG 2438 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTG 23530 || | ||||| || || || | ||| || || |||||||| || ||||| || || ||| Sbjct 2439 TACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAACGAGCAGTATTG 2498 Query 23531 TTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTC 23590 ||| | || | | ||| |||| || || || || ||| || || | | Sbjct 2499 TTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTACCAGCAATATAA 2558 Query 23591 GAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATC 23650 || || || || |||| |||||| |||| ||||| || || || | | || || || Sbjct 2559 GAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCAGTCTTAGAAATT 2618 Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACC 23710 || || ||| | || |||||||| || ||||| || || || | | | | Sbjct 2619 TGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCCTTCATAGTCAAC 2678 Query 23711 AAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCG 23770 ||||| || ||||||||||| | || ||| | || ||| || || || ||||| Sbjct 2679 AAGAAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGCA 2738 Query 23771 TGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 || |||||||| | | ||||| || ||||| || || ||||||||||| || || | Sbjct 2739 TGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGCATCGATATCGTTG 2798 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC--GACCGTGACGC 23888 || || ||||| | || || ||||| |||| | ||| ||||| || | | | | | Sbjct 2799 CCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCTTTCAGCAACCTTA--C 2856 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | || || |||| || || ||||| | | || || || ||||| | | || || | Sbjct 2857 CATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAAGAAATTGTATTTGA 2916 Query 23949 AGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 | |||||||| | | ||||| || || | ||||| Sbjct 2917 AATCACGATCATAGATGATGGCAGAGTTAAGACGGT 2952 >seq2232 Length=20840 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || |||||||| |||||| | || |||||| | || Sbjct 741 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCT 682 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || || || | || |||||||||||| | || || ||||| Sbjct 681 GATTCTATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACCAA 622 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || |||||||||||| || | || || ||| Sbjct 621 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACAAC 562 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| |||| ||| | || | || |||| Sbjct 561 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTA 513 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||||||||| ||||| || || || || || ||||| | || || ||| | Sbjct 972 AACATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCC 913 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||||| | || | ||||| || | || ||||||||||| | || || ||| Sbjct 912 TCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGAC 853 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||||| || || ||||| ||||| || ||||| || | || || Sbjct 852 CAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTAC 793 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||||||||| || ||||| |||| ||| | || | || |||| Sbjct 792 AATATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGTA 741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || ||||| || || || | || || ||| | ||| Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | ||||| || | || ||||||||||| | || || ||||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| || ||||| || | || || || Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||||||||| || ||||| |||| ||| Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTT 301 >seq2078 Length=27221 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || ||||||||||| ||||| | || || ||| | || Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| ||||| || | || || || ||||| | || || ||||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATA 31370 |||||||| || || || |||||||| || ||||| || | |||| | || || | Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCA--GACTACA 1107 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||| || |||||||| || || |||||||| ||| Sbjct 1106 ACATCCAGAAAGAATCTACACTACATCTGGTGCTT 1072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||||||||| ||||| || || || ||||| || ||| | || |||||| | Sbjct 1516 AAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATC 1457 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||| || || || | || ||||||||||| | || || || Sbjct 1456 CTCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAGA 1397 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA----CTCTATGACTATGAGCG 31364 || || ||| | || ||||| || || || | ||||| | || | ||| | | Sbjct 1396 TCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCT--TTATCA--G 1341 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| || |||||||| || || |||||||| ||| | || || || |||| Sbjct 1340 ACTACAACATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTTAGAGGTGGTA 1284 >seq1825 Length=31147 Score = 102 bits (112), Expect = 7e-17 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 22136 GCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAA 22195 || ||| | || | ||| ||||||||||| ||||||| |||| ||||||| || || ||| Sbjct 7816 GCGGGTCTTGTTCTAAGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAA 7875 Query 22196 TGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACA--TTGAACGACTGAC 22253 || || || |||| || |||||| | || | | |||| ||| || | || || Sbjct 7876 TGCATAGAGGTCAGCTTACCATAATTAGGTTCGGC--TGTAAACAAGTTCATAGATTGGG 7933 Query 22254 TCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTT 22313 ||||| ||||| || || ||||| || ||||||| || | ||| | || |||| Sbjct 7934 ATTGATCAATAAAAGCACCACGATCAGCAGCCATATCAATAATTGTTCTTTGAGAGATTT 7993 Query 22314 CCCATACGGTCTTGTACAGTTGCCTGA 22340 |||| || |||||||| |||| | ||| Sbjct 7994 CCCAGACAGTCTTGTAGAGTTTCTTGA 8020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750720166880