Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2381 147 4e-30 >seq2381 Length=15399 Score = 147 bits (162), Expect = 4e-30 Identities = 373/564 (66%), Gaps = 25/564 (4%) Strand=Plus/Minus Query 101808 AAGACAAGGCTATCTTGTTTAACGCTG-CACAACACTTCCCCGCCATCAAGAAGAAGGAG 101866 |||| |||| || |||||| | ||| | ||| ||||| | |||||| |||| Sbjct 11162 AAGAAAAGGAGATGTTGTTTGATGCTATCGAAACCATTCCCTGT-ATCAAGCGTAAGGCA 11104 Query 101867 CAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTGGCGGAACTAATTGTTGCCTTT 101926 | ||||| | || ||||| | || || ||| || || | | | ||||||||| Sbjct 11103 GATTGGGCATTCAAGTGGATCTCTGGTAACGACTCTTTTGCTGAGCGATTGGTTGCCTTT 11044 Query 101927 GCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAAC 101986 ||||| || ||||| |||||||| |||| |||| || || || |||||| ||||||| Sbjct 11043 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAG 10984 Query 101987 AGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTT 102046 | ||| | |||||||| | || | ||| || || | || | | | || ||||||||| Sbjct 10983 CGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTT 10924 Query 102047 CATCGCGACTTTGCATGCATGCTGTTGA--------AAAAGGGTT--TTGTTGATACCCC 102096 || |||||||| || | |||| | || | | || || | | | Sbjct 10923 CACACTGACTTTGCTTGTCTCTTGTTCACTCACCTCAAGAAGATTCCTTCTGCCGAACGT 10864 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 |||||||| | || ||||| ||| || || | |||||||||||||| | Sbjct 10863 ATCAAGAGCA-----TC-----ATTGT---TGAGGCTGTTGGTATTGAACAAGAATTCTT 10817 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 || | | | | ||||| || || | || |||||| ||| | ||| |||| ||||| Sbjct 10816 GACTGATGCTTTACCTGTCAACTTGATTGGTATGAACGCTAAGCTTATGTGCCAATACAT 10757 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 |||||| || || ||| | |||||| | || | || ||| ||| |||| || Sbjct 10756 TGAATTCGTCGCCGATCGTTTGATGGTTGCCCTTGGCTTTGATAAGATCTACAATGCCAC 10697 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 |||||||| |||||||||| ||||| || | ||||||||||| ||||| || Sbjct 10696 TAACCCCTTTGATTTCATGGACATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAA 10637 Query 102337 GAGAGTCGCCGAGTATCAACGTGC 102360 | | || | || || |||||||| Sbjct 10636 GCGTGTTTCTGACTACCAACGTGC 10613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989548321167370