Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq244 423 2e-113 seq2381 232 8e-56 seq1825 127 3e-24 >seq244 Length=4003 Score = 423 bits (468), Expect = 2e-113 Identities = 1378/2116 (65%), Gaps = 40/2116 (2%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||||||||| || || || ||||| ||| || || || |||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | | | || || || || |||||||| | |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 62256 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62312 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 62313 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62372 ||| ||| | ||||||| ||||| ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 62373 AGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62432 || ||||| || | ||||||||| |||| | || | ||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 62433 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62492 || || ||||| | | ||||| ||||| ||||||| || || ||||| |||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 62493 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTT 62550 || || ||||| | || | || ||| ||||| | ||||| || || || | Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACC--ATGTTGAGCAATTTTTTCCTTGAGCTTAA 1593 Query 62551 CCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTAC 62610 |||||| ||| || || | || ||| |||||| | | ||| || Sbjct 1594 CCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTTG- 1652 Query 62611 TGGCGTACGAT--CCTACATATGTATCATA-TGGTCCTTCCTTCT-CAGCTAGTTTACAA 62666 | | | || || ||| || ||||| | |||| |||| |||| || | ||| Sbjct 1653 -GACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTT--TTCTTCAGCCAGCTCGCAA 1709 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT 62726 || ||||| ||| ||| ||| || |||||||| || | |||| || | | ||| Sbjct 1710 GAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGCT 1769 Query 62727 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62786 || || ||| || | | | || | | ||||| | ||| || | ||||||||||| Sbjct 1770 TCAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACCT 1829 Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 | ||||||||| | || | ||| || ||| ||||||||| | ||||||||| || Sbjct 1830 AGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTTG 1889 Query 62847 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 62906 ||||| || || ||||| | ||||| |||||||| || ||||| | || || | Sbjct 1890 ATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCTGG 1949 Query 62907 AAATCAAATCGCCCA---TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAC 62963 || || | | || | | ||||| || ||| |||| || |||| ||||| Sbjct 1950 AAGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAG 2009 Query 62964 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 63023 || || || |||| || | |||| | || || || || | |||||||||||| Sbjct 2010 ACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTG 2069 Query 63024 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63083 ||||| || || ||||| || ||||||||| ||||||| ||||||||||| || |||||| Sbjct 2070 ATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAAT 2129 Query 63084 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 63143 ||| |||| |||||| | |||| ||| | || || | ||| | | | ||||| ||| Sbjct 2130 GGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATT 2189 Query 63144 ATAGATTTGTATCTCCTTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTC 63201 | | | ||| | ||| |||| || | |||| ||| | || || || | Sbjct 2190 GTTTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTAT--AATGCAACAAATTCATCAC 2247 Query 63202 CCCAAACATTGTCCAA-TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63260 |||| || || | || || |||| ||||| ||||| | ||| ||||| || || | Sbjct 2248 CCCATAC-TTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTG 2306 Query 63261 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGT 63319 || || || | ||| ||||||||||| | ||||||||| ||| || | || | | Sbjct 2307 TCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGAGC 2365 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 |||| ||| || || || |||||| | | ||| | ||| | | |||||||| || Sbjct 2366 TCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGTG 2425 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| ||||||||||| || || | | || || || ||||| || |||||||| | || Sbjct 2426 CCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATA 2485 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 | ||| || || || | || | |||||| || | || || || || ||| || || Sbjct 2486 ACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGT 2545 Query 63500 ACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63559 ||| | ||||| ||| |||||||||| || | | ||| || || || || Sbjct 2546 ACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGC 2605 Query 63560 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATC 63619 | ||||| ||| || || |||||| || || ||||| ||||| || |||||| Sbjct 2606 AGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATC 2665 Query 63620 GATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 |||| || || || || || ||||||||| |||||| ||| || ||||| || | Sbjct 2666 CTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAA 2724 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 |||||| || || ||||| | |||||| | || ||||| |||||||| || | Sbjct 2725 GAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGG 2784 Query 63739 AGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || |||| | ||| |||||| || || || |||||||| | || || || ||||| Sbjct 2785 CATCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCT 2842 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 |||| ||| || || || || | |||||| || || | || || |||||||| Sbjct 2843 TTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAA 2902 Query 63857 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 | |||||| || || || || || || || | || || || || ||| Sbjct 2903 GAAATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGTTT 2960 Query 63917 GTTA--ACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGG 63973 | | || |||| |||| || ||| | || || || || || || || | ||||| Sbjct 2961 GCCAAGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTAGG 3019 Query 63974 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 64033 || | |||||| ||| ||| || | |||| | || | || || |||||||| || Sbjct 3020 GTTGATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTATG 3079 Query 64034 TAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACA 64093 || || || || || || | || || | | || ||||| || || ||||| || Sbjct 3080 TAAGTTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTGAGTAGTAGT-CA 3138 Query 64094 AGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATA 64152 || || || | ||||| || || |||| | ||| | ||||| || || | ||| | Sbjct 3139 TGTAAGCAGCGGTCTCGGCAGCAAGGTTGTCAAGTTCAATGGTTGTAACACCTTGATAAA 3198 Query 64153 TTCCTTGAATAACCTT 64168 ||| ||| ||||| Sbjct 3199 CGCCTGAAATGACCTT 3214 >seq2381 Length=15399 Score = 232 bits (256), Expect = 8e-56 Identities = 569/856 (66%), Gaps = 29/856 (3%) Strand=Plus/Plus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 |||||| ||| ||||| || || || || || || || |||| | || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 |||||||||||| || || || ||||||| || || | ||| || | || ||||| Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 | ||| ||||||||||| || ||| ||| | | | ||||| || || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 || || | ||| |||| | |||||||||||||| || || | | ||| | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCA---ACAATGAT 10854 Query 33533 TCTAACGGTTTCTTCACTCGGTGGATGTAAT-------AAATGTTTAAACATCAAACATG 33585 || || | | |||| || | ||| | || | |||| | ||| | Sbjct 10855 GCTC----TTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAG 10910 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | || || ||| ||||| || || | || || | ||||||||| || || | || | Sbjct 10911 CAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAG 10970 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| || |||||||| || ||||| || || || || ||||| || || |||||||| | Sbjct 10971 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATAC 11030 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33765 |||| || ||||||||||||| | || ||| || || | || | || ||||||| Sbjct 11031 CTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTACCAGAGATCCACT 11090 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | |||||||| ||||| || | ||| || || ||||| || |||| ||| | Sbjct 11091 TGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACA 11150 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | ||||| | | ||||||| | || || || ||||| | ||| || |||| | || Sbjct 11151 TCTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCAT 11210 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | ||||| ||||| || || || || || ||||||||| | || || | |||| |||| Sbjct 11211 GGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTT 11270 Query 33946 CTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCAT---CACTGGCTGCAAA 34000 | ||| || ||| || | || |||||||| |||| |||| ||||| ||||| Sbjct 11271 CATCACAGAA--GTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTG---GCAAA 11325 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAAT 34056 || ||||| ||| | || || || ||||| || |||| | ||| || ||||| Sbjct 11326 GAAGGCCAAGACACGAGAGATGAAGAATCGTTCGT-TGCTGTTCATTTTGTTCTCCCAAT 11384 Query 34057 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 | | || || || | || | |||||| | |||||||| || || || ||||||| Sbjct 11385 CGTGTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTT 11444 Query 34117 TATACATATTCCAGAT 34132 | || | | |||||| Sbjct 11445 TGTAGAATTGCCAGAT 11460 >seq1825 Length=31147 Score = 127 bits (140), Expect = 3e-24 Identities = 380/585 (65%), Gaps = 6/585 (1%) Strand=Plus/Plus Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 |||||||||||||| || ||||||| | | || | ||| | | | ||| || Sbjct 9281 CATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATCAGC 9340 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 ||| ||||||| | || || | || | | | |||| |||||| ||||| | ||| Sbjct 9341 ACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTA 9400 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 ||||| | ||| || || || || ||| || | | ||| |||| ||| Sbjct 9401 CATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTCATT 9460 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 | | || | | ||| || | |||||| || ||| ||||||||||||| | || || Sbjct 9461 AAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTAAGA 9520 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 ||| | |||| || || | ||| | ||| | || || || ||||||||| Sbjct 9521 ACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACCAGCAGCTTTAGAGATACG 9580 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || || | |||| ||||||||||| ||||| || ||||| || |||| | | || Sbjct 9581 AGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGACAAG 9640 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 |||||||| || | ||| | || || |||||||| || | ||| || | ||| || Sbjct 9641 GAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCATG 9700 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || || |||| || | |||| ||| |||| | || |||| ||| ||| Sbjct 9701 AGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATC---TTG 9757 Query 63755 ---ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 ||| || || | || |||||||| | ||||| ||||| | ||||||||| || Sbjct 9758 ACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTACC 9817 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 ||| || || || | ||| |||||| || || |||||||| Sbjct 9818 GTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795446165920