Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq244 246 3e-60 seq2381 158 1e-33 >seq244 Length=4003 Score = 246 bits (272), Expect = 3e-60 Identities = 1108/1739 (64%), Gaps = 34/1739 (2%) Strand=Plus/Plus Query 36831 CATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAG 36890 || ||| ||||| || || || || ||| | ||| || || || |||||||| |||| Sbjct 1121 CAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTTGTCAA 1180 Query 36891 TTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGC 36950 ||| | | |||| | | | || | || ||| |||||||||||| || | || Sbjct 1181 TTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATGTAAGC 1240 Query 36951 ACCTCTGTCGGCTGCCATTTCTAA-AATACATTTTTGAGATATCTCCCAAACCGTTTTAT 37009 ||| | || || ||||| || | ||| | | || | ||||| || ||||| | Sbjct 1241 ACCACGATCAGCAGCCATATCAACCAATGTACGCT-GACTCAATTCCCAGACTGTTTTGT 1299 Query 37010 ATATTTGTTTTATATTATCTGGTAAATCTA-AATGTT--GAATAGAACCATTATGTAACA 37066 | || | || | || | || | | || |||||| | | |||||| || ||| Sbjct 1300 AGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCAGACA 1359 Query 37067 CAATTGTATTCTTTATGTCATTATTCCACATA----TTTCTACTTATTAGTTCTCTCAAT 37122 || | ||||| | |||| ||||||| | |||| || | | ||| || Sbjct 1360 TGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTC----AAG 1415 Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || ||| || |||| || || || |||| | || | | ||||| | ||| Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || ||||| | | ||||| || || |||||||| ||||| ||||| ||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | | || || | | |||||| | |||| | | || || | | | Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACCATGTTGAGCAATTTTTTCCTTGAGCTTAACC 1595 Query 37303 CAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTAC 37360 |||||||| | || || || | | || ||||||||||||||| | | ||| || Sbjct 1596 CAATCCCAGAGGTCAGTGGGAGTGACATT--CCACATATCATATTGCAATACACCCTTGG 1653 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 | | ||| || ||| || ||||| || | || ||| || |||||| || Sbjct 1654 ACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTTTTCTTCAGCCAGCTCGCAAGAAG 1713 Query 37421 ATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTT 37480 ||||| || || | ||| |||||||| |||||||| ||||| | | || ||||| Sbjct 1714 CTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGCTTCAG 1773 Query 37481 CGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATAC 37540 |||||| ||| | || ||| ||||| || || | ||| |||||||| | || Sbjct 1774 GAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACCTAGAC 1833 Query 37541 CTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600 | || || | || ||| || || | | ||| || || |||||||| ||||||| Sbjct 1834 CGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTTGATAT 1893 Query 37601 CTATTATTTTATTTAGATTTTTAACTAGTATTTT--CGTAATTATTCTCAACTTGTCGAA 37658 | || || ||||| | ||| || | || ||| || || || | ||||| | ||| Sbjct 1894 CGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGC--AACTTCTGGAA 1951 Query 37659 --CATAAAT---ACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACAT 37713 | ||| | ||| | | |||||| | ||| | ||| || | | ||||| Sbjct 1952 GTCGTAACTTTCACGGT--TGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAG 2009 Query 37714 ACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTA 37773 |||||||||||||| | || ||| | ||| |||||||| | ||||| | | Sbjct 2010 ACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTG 2069 Query 37774 ATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATAC 37833 || || ||||| || || || ||| | ||||| | ||| ||||| || || | Sbjct 2070 ATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAAT 2129 Query 37834 GGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACG 37893 || | || ||| ||||||| || | |||| | ||| || || ||| || | Sbjct 2130 GGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATT 2189 Query 37894 ATCGCTTTAAttttt--ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCC 37951 | || || | | ||| || ||| || | | |||||| ||| |||| | Sbjct 2190 GTTTCTCTAGCTCTGCCTTCCTT--TTCATACTTTTCGTATAATGCAACAAATTCATCAC 2247 Query 37952 CCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTT 38011 ||||||| || || | ||| ||| ||| ||||| | | |||||||| ||| | Sbjct 2248 CCCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTGT 2307 Query 38012 TTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTC 38071 ||| || ||||| || | |||||||||||| | ||| || || || | || Sbjct 2308 CACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGCATAGAACAAGTCACGAGCTC 2367 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCT-TAAGCTTAGAAAATCGAATATATCAGCGTGC 38130 || ||| || || || | |||||||| || || ||||| | ||| ||||||| |||| Sbjct 2368 TAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGT-GAAAATATCAGGGTGC 2426 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190 |||||||| | || || | | || || || | || | ||| ||||||| || ||| Sbjct 2427 CATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAA 2486 Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250 | | | || || || | | | ||||| || | | |||||||| | ||||| || Sbjct 2487 CGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTA 2546 Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCA 38310 || | ||||||| || || || || || || | ||| || || ||||| ||| Sbjct 2547 CCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCA 2606 Query 38311 TGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC 38370 || || ||| ||| || |||||| || || | |||||||| ||| |||||| Sbjct 2607 GTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCC 2666 Query 38371 TTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430 || || | | | || ||| |||||||||||| ||||| || || || || | Sbjct 2667 TTCATAGTCAACAAGAAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGA 2726 Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 |||||| ||||| | || | ||| |||| | || ||||| || || | || Sbjct 2727 GTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGCA 2786 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || ||||| ||| |||||||| | || || | ||| | || ||||||||||||||| Sbjct 2787 TCGATATCGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCTTTC 2845 >seq2381 Length=15399 Score = 158 bits (174), Expect = 1e-33 Identities = 451/689 (65%), Gaps = 7/689 (1%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| ||||||||||| || || || |||| | | |||||||| || | | || Sbjct 10741 ATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTTGAC 10800 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | |||| | ||||| || || | ||| ||| ||| || |||| || || | | Sbjct 10801 AGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATGCTCTT 10860 Query 11584 TATAACTTCCTTAGATGGTGGATGTAATAAATGTT--TAAACATTAAACACGCAAAATCA 11641 ||| ||| ||| || || | | | || | |||| | ||| ||||| ||| Sbjct 10861 GATACGTTCGGCAGAAGGA--ATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGTCA 10918 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 || | |||||| || | || || ||||| ||||| || || || || ||||| | Sbjct 10919 GTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGAGA 10978 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || || || || | ||| || |||| |||||||||||||| ||||| || || || ||| Sbjct 10979 CCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGACA 11038 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCTGGCC 11821 || ||||| || || | || || || | | ||| | ||| ||||| || ||| Sbjct 11039 GCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTACCAGAGATCCACTTGAATGCC 11098 Query 11822 CAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTT 11881 ||||| || || || | || || ||||| ||||| | ||| || | ||| Sbjct 11099 CAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCTCCTTT 11158 Query 11882 TCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTT 11941 ||| ||||||| | | || || || || || ||||| || |||| | ||| || || Sbjct 11159 TCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGATGTTC 11218 Query 11942 TCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAA 12001 || ||||| ||||| || |||||||||||| || || | || ||| || || | Sbjct 11219 TCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCATCACAG 11278 Query 12002 AATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATA 12061 || ||| | || || ||||| || | ||||||| | ||||| || || | | | Sbjct 11279 AAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGAAGGCCAAGACA 11338 Query 12062 TGTTTTATAAAGTATTTTTCGT--CT-TTAGTTAATTTATCCCAATCATCTAAATCTTTT 12118 | || ||| || ||||| || || || || |||||||| | | || || Sbjct 11339 CGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTTGTTCTCCCAATCGTGTTGGTCCTTG 11398 Query 12119 GATAAATCTACTTCTTCAACGGTCCAAAA 12147 || || || | ||||||| | |||||||| Sbjct 11399 GACAAGTCAATTTCTTCAGCAGTCCAAAA 11427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468508319640160