Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq244 398 1e-105 seq1825 127 3e-24 >seq244 Length=4003 Score = 398 bits (440), Expect = 1e-105 Identities = 1374/2118 (65%), Gaps = 44/2118 (2%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| | ||||||||| || || || ||||| ||| || || || |||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | ||| | | | || || || || |||||||| | |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 65049 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 65105 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 65106 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 65165 | ||| ||| | ||||||| ||||| ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 || || || || | ||| ||||| |||| | || | ||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 || || ||||| | | | ||||| ||||| ||||||| || || ||||| |||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 65343 || || ||||| | || | || ||| ||||| | ||||| || || ||| || Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACC--ATGTTGAGCAATTTTTTCCTT--GAGCTT 1591 Query 65344 --CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT 65401 |||||| ||| || || | || || ||| | | ||| || Sbjct 1592 AACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTT 1651 Query 65402 ACTGGCGTACGAT--CCTACATATGTATCGTA-TGGTCCTTCCTTCT-CAGCTAGTTCAC 65457 | | | || || ||| || || || | |||| |||| |||| || || | Sbjct 1652 G--GACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTT--TTCTTCAGCCAGCTCGC 1707 Query 65458 AACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTG 65517 || || ||||| ||| ||| ||| || ||||| || || | |||| || | | | Sbjct 1708 AAGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAG 1767 Query 65518 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 65577 |||| | ||| || | | | || | | ||||| | |||||| | |||||||||| Sbjct 1768 CTTCAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACAC 1827 Query 65578 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 65637 | | ||||||||| | || | ||| || ||| ||||||||| | ||||||||| | Sbjct 1828 CTAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGT 1887 Query 65638 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 | ||||| || || ||||| | ||||| |||||||| || ||||| | || || Sbjct 1888 TGATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCT 1947 Query 65698 GAAAATCAAATCGCTCA---TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTAC 65754 | || || | | ||| | | ||||| || ||| |||| || |||| |||| Sbjct 1948 GGAAGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTAC 2007 Query 65755 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 65814 | || || || |||| || | |||| | || || || || | |||||||||| Sbjct 2008 AGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACT 2067 Query 65815 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 65874 |||| || || || ||||| || ||||||||| ||||||| ||||||||||| || |||| Sbjct 2068 TGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGA 2127 Query 65875 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 65934 ||||| |||| |||||| | |||| ||| | || || | ||| | | | ||||| | Sbjct 2128 ATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGA 2187 Query 65935 TTATAGATTTGTATCTCT--TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 65992 || | | | || |||| ||| |||| || | || ||| | || || || Sbjct 2188 TTGT--TTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATC 2245 Query 65993 TCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 66051 ||||| || || | || ||||||| ||||| ||||| | ||| ||||| || || | Sbjct 2246 ACCCCATAC-TTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCAT 2304 Query 66052 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTG 66110 || || || | ||| ||||||||||| | ||||||||| ||| || || || | Sbjct 2305 TGTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGA 2363 Query 66111 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAA 66170 | |||| ||| || || || |||||| | | ||| | ||| | | ||||||| Sbjct 2364 GCTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGG 2423 Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230 ||||| ||||||||||| || || | | || || || ||||| || |||||||| | Sbjct 2424 TGCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACA 2483 Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290 || | ||| || || || | || | |||||| || | || ||||| || ||| || Sbjct 2484 TAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTA 2543 Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCT 66350 || || | ||||| ||| | |||||||| || | | ||| || || || Sbjct 2544 GTACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCA 2603 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || | ||||| ||| || || |||||| || || ||||| || || ||| |||| Sbjct 2604 GCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCA 2663 Query 66411 TCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469 ||| |||| || || || || || ||||||||| ||||| ||| || ||||| || Sbjct 2664 TCCTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAA 2722 Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529 | |||||| || || ||||| | |||||| | || ||||| |||||||| || Sbjct 2723 AAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGC 2782 Query 66530 TGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 66587 | || |||| | ||| |||||| || || || |||||||| | || || || ||| Sbjct 2783 GGCATCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGT 2840 Query 66588 CTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 66647 |||||| | | ||| || || || | |||||| || || | || || |||||| Sbjct 2841 CTTTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCA 2900 Query 66648 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATAT 66707 || | |||||| || || || || || || || | ||||| || || | Sbjct 2901 AAGAAATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGT 2958 Query 66708 TTGTTA--ACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA 66764 ||| | || | || |||| || ||| | || || || || || || || | ||| Sbjct 2959 TTGCCAAGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTA 3017 Query 66765 GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTG 66824 || |||| |||||| ||| ||| || | |||| | || | || || ||||| || Sbjct 3018 GGGTTGATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTA 3077 Query 66825 TGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTA 66884 |||| || || | || || | ||| || | | || ||||| || || ||||| Sbjct 3078 TGTAAGTTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTGAGTAGTAGT- 3136 Query 66885 CAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 66943 || || || || | ||||| || || |||| | ||| | ||||| || || | ||| Sbjct 3137 CATGTAAGCAGCGGTCTCGGCAGCAAGGTTGTCAAGTTCAATGGTTGTAACACCTTGATA 3196 Query 66944 TATTCCTTGGATAACCTT 66961 | ||| || ||||| Sbjct 3197 AACGCCTGAAATGACCTT 3214 >seq1825 Length=31147 Score = 127 bits (140), Expect = 3e-24 Identities = 380/585 (65%), Gaps = 6/585 (1%) Strand=Plus/Plus Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 |||||||||||||| || ||||||| | | || ||||| | | | ||| || Sbjct 9281 CATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATCAGC 9340 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 ||| ||||||| | || || | || | | | |||| |||||| ||||| | ||| Sbjct 9341 ACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTA 9400 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||||| | ||| || || || || ||| || | | ||| |||| ||| Sbjct 9401 CATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTCATT 9460 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 | | || | | ||| || | |||||||||||||||||||||||| || | || || Sbjct 9461 AAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTAAGA 9520 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 ||| |||| || || | ||| | ||| | || || || ||||||||| Sbjct 9521 ACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACCAGCAGCTTTAGAGATACG 9580 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || || | |||| || |||||||| || || |||||||| || |||| | | || Sbjct 9581 AGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGACAAG 9640 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 |||||||| || | ||| | | || |||||||| || | ||| || | ||| || Sbjct 9641 GAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCATG 9700 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 || || |||| || | |||| ||| |||| | || |||| ||| ||| Sbjct 9701 AGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATC---TTG 9757 Query 66548 ---ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 ||| || || | || |||||||| | ||||| ||||| | |||||| ||||| Sbjct 9758 ACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTACC 9817 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 ||| || || || | ||| |||||| || || |||||||| Sbjct 9818 GTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658149648771760