Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2381 114 9e-21 >seq2381 Length=15399 Score = 114 bits (126), Expect = 9e-21 Identities = 277/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| ||||| || | || ||||| |||||||| | || |||||||| Sbjct 11049 GCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTC 10990 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||||| || ||| | || || ||||| | || | ||||| ||| Sbjct 10989 AAGAAGCGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAA 10930 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGT-CA 22928 ||||| ||| ||||||||||||| | |||| | || | || | || | | | Sbjct 10929 GGTCTTCACACTGACTTTGCTTGTCTCTTGTTCACTCACCTCAAGAAGATTCCTTCTGCC 10870 Query 22929 GGACG-ATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAG 22987 | ||| || | | | ||||| ||| || |||| ||||| | ||||| | Sbjct 10869 GAACGTATCAAGAGC--ATCATTGTTGAGGCTGTTGGTATTGAACAAGAATTCTTGACTG 10812 Query 22988 AGGCACTA-AAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAG 23046 | || || | || | | |||||||||| | | |||| | | ||||| | Sbjct 10811 ATGCTTTACCTGTCA-ACTTGATTGGTATGAACGCTAAGCTTATGTGCCAATACATTGAA 10753 Query 23047 TTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAAT 23106 || || || ||||| || | | |||||| || | || ||||| || || | | || Sbjct 10752 TTCGTCGCCGATCGTTTGATGGTTGCCCTTGGCTTTGATAAGATCTACAATGCCACTAAC 10693 Query 23107 CCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || |||||||||||||| | ||| || |||| || || ||||||||||| Sbjct 10692 CCCTTTGATTTCATGGACATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGA 10640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356221382746042