Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2232 87.8 2e-12 seq2024 82.4 8e-11 seq244 82.4 8e-11 >seq2232 Length=20840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | ||| ||||||| ||||| |||||||| || || || || Sbjct 284 TGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCA 343 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | | | ||||| | |||||||||||| |||| |||||||| || || || Sbjct 344 GAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGG 403 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| ||||| ||| ||||| || | | || | | ||||| || || Sbjct 404 GGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCG 463 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | |||||||| || | || || || || || |||||| Sbjct 464 ACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCATA 514 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| |||||||| || || || || Sbjct 743 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAA 802 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | | | ||||| | |||||||||||| |||| |||||||| || || || || Sbjct 803 AGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGG 862 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||||| || | | || | | ||||| || || || Sbjct 863 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACT 922 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || ||||| |||||||| Sbjct 923 TCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 >seq2024 Length=32104 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 153875 GTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAG 153934 || |||||| | | |||||||| | ||| ||| | |||||||| ||||||||||||| Sbjct 3718 GTCTTCAAATGCTTGACCAAACGAACTGTCAAGACCAGGACATTCATTGGGACACATCAA 3659 Query 153935 TGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCG 153992 |||||| |||||||| | || || |||||||| || ||||| ||| ||| || Sbjct 3658 AGACCATTCACCATTTTCCTCCACACGCTTCATAAATAAATTGGGAATCCAAAGGCCG 3601 >seq244 Length=4003 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 152716 GAGCGACGGTAAA-TTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCC 152774 || |||||||||| ||| ||| | | | || ||| | ||||| ||||||||||| || Sbjct 1078 GATCGACGGTAAACTTGATGGCA-TCAACAGCAGGACGAGTACGCAAATAGTACATACCG 1136 Query 152775 GTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAG-TAGG 152833 |||||||| || |||||| || || | ||||| | || ||| |||||| |||| Sbjct 1137 GTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTTGTCAATTTA-CCAAAGTTAGG 1195 Query 152834 GTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGC 152893 || || ||| | | || || ||||||||||||||| | || || | ||| || || Sbjct 1196 TTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATGTAAGCACCACGATCAGCAGC 1255 Query 152894 CATGTC 152899 ||| || Sbjct 1256 CATATC 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496046550948800