Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq244 459 4e-124 seq2381 228 1e-54 seq1825 127 3e-24 >seq244 Length=4003 Score = 459 bits (508), Expect = 4e-124 Identities = 1385/2114 (66%), Gaps = 36/2114 (2%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||||||||| || || || ||||| ||| || ||||| |||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | | | || || || || |||||||| | |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 78928 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 78984 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 78985 GCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 79044 | ||| ||| | ||||||| || || ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 79045 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 79104 || || || || | ||| ||||| |||| | || | ||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 || || ||||| | ||||||| ||||| ||||||| || || || ||||||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTAT-GATCTGATTTTATCTTTTAGAGATT- 79222 || || ||||| | || | || ||| | | || | ||||| || || ||| || Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACCATGTTGAGCA-ATTTTTTCCTT--GAGCTTA 1592 Query 79223 -CCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTT- 79280 |||||||||| || |||| || |||||||| | ||||||||| | | ||| || Sbjct 1593 ACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTTG 1652 Query 79281 -ACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 || | || || | || |||||||| || | | ||| || | || ||| Sbjct 1653 GACACAGGACTG--CCGGGATAGGTTTCATAGTAACCCTTTTCTTCAGCCAGCTCGCAAG 1710 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 79399 || ||||| || ||| ||| || ||||| ||||| | ||||||| | | |||| Sbjct 1711 AAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGCTT 1770 Query 79400 CTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 79459 | | ||| || | | | || | | ||||| | |||||| | ||||||||||| | Sbjct 1771 CAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACCTA 1830 Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 ||||||||| | || | ||| || || ||||||||| | ||||||||| || | Sbjct 1831 GACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTTGA 1890 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579 |||| || || ||||| | || || |||||||| || ||||| | | || | | Sbjct 1891 TATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCTGGA 1950 Query 79580 AATCAAATCGTCCA---TCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAA 79636 | || | | | || | | ||||| || ||| || | || |||| ||||| | Sbjct 1951 AGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAGA 2010 Query 79637 CGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAA 79696 | || || |||| || | |||| | ||||| || || | |||||||||||| | Sbjct 2011 CAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTGA 2070 Query 79697 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACG 79756 | || || || ||||| || ||||||||| ||||||| ||||||||||| || ||||| | Sbjct 2071 TAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAATG 2130 Query 79757 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 79816 || |||| |||||| | |||| ||| | || || | ||| | | | ||||| ||| Sbjct 2131 GATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATTG 2190 Query 79817 TAGACTTGTATCTCT--TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCC 79874 | | || |||| ||| |||| || | | |||||| | || || || || Sbjct 2191 T--TTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATCACC 2248 Query 79875 CCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATC 79934 ||| || || | ||||||| ||| | |||||| | ||| ||||| || |||| || Sbjct 2249 CCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTGTC 2308 Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC 79993 ||| || | ||| ||||||||||| | ||||||||| ||| || | || | | || Sbjct 2309 ACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGAGCTC 2367 Query 79994 TATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 80053 || || || || || |||||| | | ||| | ||| | | |||||||| |||| Sbjct 2368 TAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGTGCC 2427 Query 80054 ACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATC 80113 | ||||||||||| || || | | || || || ||||| || |||||||| | || | Sbjct 2428 ATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAAC 2487 Query 80114 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 80173 ||| || || || | || | |||||| || | || ||||| || ||| || || | Sbjct 2488 GAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTAC 2547 Query 80174 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 80233 | | ||||| ||| |||||||||| || | | ||| || || || || Sbjct 2548 CAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCAG 2607 Query 80234 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAA 80293 | ||||| ||| || || |||||| || || ||||| || || || |||||| Sbjct 2608 TCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCCT 2667 Query 80294 TCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 80352 |||| || || || || || ||||||||| ||||| ||| || ||||| || | Sbjct 2668 TCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGA 2726 Query 80353 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 80412 |||||| || || ||||| | |||||||| || ||||| |||||||| || | Sbjct 2727 GTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGCA 2786 Query 80413 TCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTT 80470 || |||| | ||| |||||| || || || |||||||| | || || || ||||||| Sbjct 2787 TCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCTTT 2844 Query 80471 CAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAAT 80530 || | | ||| ||| || || | ||||||||| || | || || |||||||| Sbjct 2845 CAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAAGA 2904 Query 80531 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGT 80590 | |||||| || || || || || || || | ||||| || || |||| Sbjct 2905 AATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGTTTGC 2962 Query 80591 TA--ACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 80647 | || | || |||| || ||| | || || || || || || || | ||||| | Sbjct 2963 CAAGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTAGGGT 3021 Query 80648 TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 80707 | | |||||| ||| ||| || | |||| | || | || || |||||||| |||| Sbjct 3022 TGATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTATGTA 3081 Query 80708 GATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAG 80767 || || | || || | || || || | || |||||||| || ||||| || | Sbjct 3082 AGTTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTGAGTAGTAGT-CATG 3140 Query 80768 T-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATT 80826 | || || | ||||| || || |||| | ||| | ||||| || || | ||| | Sbjct 3141 TAAGCAGCGGTCTCGGCAGCAAGGTTGTCAAGTTCAATGGTTGTAACACCTTGATAAACG 3200 Query 80827 CCTTGGATAACCTT 80840 ||| || ||||| Sbjct 3201 CCTGAAATGACCTT 3214 >seq2381 Length=15399 Score = 228 bits (252), Expect = 1e-54 Identities = 567/854 (66%), Gaps = 25/854 (3%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 |||||| ||| ||||| || || || || || || || |||| | || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 |||||||||||| || || || |||| || || || | ||| || | || ||||| Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 | ||| ||||| ||||| || ||| ||| | | | ||||| || || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910 || || | ||| |||| | |||||||||||||| || || || || || | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGAT-GC 10856 Query 49911 TCTAACGGTTTCTTCACTCGGTGGATGCAAT-------AAATGTTTAAACATCAAACATG 49963 ||| | | | | |||| || | ||| | || | |||| | ||| | Sbjct 10857 TCTT---GATACGT---TCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAG 10910 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | || || ||| ||||| || || | || || |||||||| || || || | || | Sbjct 10911 CAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAG 10970 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083 |||| || |||||||| || ||||| || || || |||||||| ||||| |||||||| | Sbjct 10971 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATAC 11030 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACT 50143 |||| || || ||||||||||| | || ||| || || | || | || ||||||| Sbjct 11031 CTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTACCAGAGATCCACT 11090 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | |||||||| ||||| || | ||| || || ||||| || |||| ||| | Sbjct 11091 TGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACA 11150 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | ||||| | | ||||||| | || || || ||||| | ||| || |||| | || Sbjct 11151 TCTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCAT 11210 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | ||||| ||||| || || || || || ||||||||| | || || | |||| |||| Sbjct 11211 GGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTT 11270 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT---CACTGGCTGCAAAAA 50380 | ||| || || | | || |||||||| |||| || | ||||| ||||| | Sbjct 11271 CATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTG---GCAAAGA 11327 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATT---CCAATCA 50436 | ||||| ||| | || || | |||||| | |||| | ||| || |||||| Sbjct 11328 AGGCCAAGACACGAGAGATGAAGAATCGTTCGTT-GCTGTTCATTTTGTTCTCCCAATCG 11386 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 | || || || | || | |||||| | |||||||| || || || |||||||| Sbjct 11387 TGTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTG 11446 Query 50497 TACATATTCCAGAT 50510 || | | |||||| Sbjct 11447 TAGAATTGCCAGAT 11460 >seq1825 Length=31147 Score = 127 bits (140), Expect = 3e-24 Identities = 382/586 (65%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 |||||||||||||| || ||||||| | | || | ||| | | | || || Sbjct 9281 CATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATCAGC 9340 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 ||| ||||||| | || || | || | | | |||| |||||| ||||| | ||| Sbjct 9341 ACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTA 9400 Query 80067 TATGGCCATAACTCCCGGT-CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 ||||| | | | || | || || || || ||| || | | ||| |||| || Sbjct 9401 CATGGCAA-AGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTCAT 9459 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185 || | || | | ||| || | |||||||||||||||||||||||| || | || || Sbjct 9460 TAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTAAG 9519 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 ||| | |||| || || | ||| | ||| | || || || ||||||||| Sbjct 9520 AACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACCAGCAGCTTTAGAGATAC 9579 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 || || | |||| || |||||||| || || || ||||| || |||| | | | Sbjct 9580 GAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGACAA 9639 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 | |||||||| || | ||| | | || |||||||| || | ||| || | ||| | Sbjct 9640 GGAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCAT 9699 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | || || |||| |||| |||| ||| |||| | || ||||| ||| || Sbjct 9700 GAGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATC---TT 9756 Query 80426 G---ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 | ||| || || | || |||||||| | ||||| ||||| | |||||| ||||| Sbjct 9757 GACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTAC 9816 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAA 80528 || || || || | |||| |||||| || || |||||||| Sbjct 9817 CGTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243534894960