Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2381 179 4e-40 >seq2381 Length=15399 Score = 179 bits (198), Expect = 4e-40 Identities = 543/835 (65%), Gaps = 8/835 (1%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||| || ||| ||| | || ||||||||||| || || |||| || || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 13643 CATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTA 13701 ||| |||||||| || || | || ||| | | |||||| | || || | | | | Sbjct 10678 CATGAAATCAAAGGGGTT-AGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCA 10736 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 | | ||| || | || ||||| ||||| |||| | | | |||||||| || | | Sbjct 10737 AACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGT 10796 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | ||||| | || || || ||||||| ||| ||| |||||||| || || Sbjct 10797 TGACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATGC 10856 Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13881 | | ||| || ||||||| | || || || | || | | ||| ||||| | Sbjct 10857 TCTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGT 10916 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 || ||||| || ||||| | || ||||||||||| || || || || || ||||| | Sbjct 10917 CAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGA 10976 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 || || || || | ||| || || | |||||||| || || ||||| || || || | Sbjct 10977 GACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGA 11036 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 | |||||||| || | ||||| || |||| || | || || ||||| || Sbjct 11037 CAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGA---GTCGTTACCAGAGATCCACTTGA 11093 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 ||||| || | || || ||| | || ||||| ||||||| ||| || | Sbjct 11094 ATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCT 11153 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| |||| | || | ||||| || ||||| | || || || |||| | || | Sbjct 11154 CCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGA 11213 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||| || ||||| || || |||||||| || ||| | ||||| | | |||||| Sbjct 11214 TGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCAT 11273 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | || ||| |||| |||||||| |||| ||||||| | ||||| || |||| Sbjct 11274 CACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGAAGGCCA 11333 Query 14302 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT---CCAATCGGATAAAT 14358 | | || ||| || | || | |||| | ||| || ||||||| | | Sbjct 11334 AGACACGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTTGTTCTCCCAATCGTGTTGGT 11393 Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 |||| || | || | ||| ||| | |||||||| ||| |||| ||||| || Sbjct 11394 CCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTGTA 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479711125567600