Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2381 170 2e-37 >seq2381 Length=15399 Score = 170 bits (188), Expect = 2e-37 Identities = 539/834 (65%), Gaps = 6/834 (1%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||| || ||| ||| | || ||||| ||||| || || |||| || || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| ||||| || || || || | | | | |||||| | || || | | | || Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | ||| || | || ||||| ||||| |||| | | | |||||||| || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | || ||| || ||||||| ||| ||| |||||||| || || | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATGCT 10857 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 ||| ||| || ||||||| | || || || | || | | ||| ||||| || Sbjct 10858 CTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGTC 10917 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 | ||||| || ||||| | || ||||||||||| || || || || || ||||| | Sbjct 10918 AGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGAG 10977 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || || || || | ||| || || | || ||||| || || ||||| || || || || Sbjct 10978 ACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGAC 11037 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || | | ||| || |||| || | || || ||||| || Sbjct 11038 AGCAGCAAAGGCAACCAATCGCTCAGCAAAAGA---GTCGTTACCAGAGATCCACTTGAA 11094 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| || | || || ||| | || |||||||| |||| || || || Sbjct 11095 TGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCTC 11154 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 ||| |||| | || | ||||| || ||||| | || || || |||| | || || Sbjct 11155 CTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGAT 11214 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 ||| || ||||| || || |||||||| |||||| | ||||| | | ||| || Sbjct 11215 GTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCATC 11274 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | || ||| ||||||||||||| || | ||||||| | ||||| || ||||| Sbjct 11275 ACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGAAGGCCAA 11334 Query 14091 TATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT---CCAATCGGCTAAATC 14147 | || ||| || | || | |||| | ||| || ||||||| | || Sbjct 11335 GACACGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTTGTTCTCCCAATCGTGTTGGTC 11394 Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||| || | || | ||| ||| | |||||||| ||| |||| ||||| || Sbjct 11395 CTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTGTA 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478571965638960