Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq244 410 2e-109 seq1825 116 5e-21 >seq244 Length=4003 Score = 410 bits (454), Expect = 2e-109 Identities = 1373/2115 (65%), Gaps = 38/2115 (2%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| | ||||||||| || || || ||||| ||| || || || |||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || | ||| | || |||| || || ||| ||||||| ||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 71011 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 71067 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 71068 GCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 71127 | || ||| | || |||| || || ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 71128 AGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 71187 || || || || | ||| ||||| |||| | || | |||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 71188 GTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 71247 || || ||||| | | ||||| ||||| ||||||| || || ||||| |||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 71248 GGTGCCACCAATAGACTATTTCTAAGACCATGT-GATCGGATTTTATCTTTTAGAGATT- 71305 || || ||||| || || | || ||||||| || | ||||| || || ||| || Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACCATGTTGAGCA-ATTTTTTCCTT--GAGCTTA 1592 Query 71306 -CCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTT- 71363 |||||| ||| || || | || || | || || Sbjct 1593 ACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTTG 1652 Query 71364 -ACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAAC 71422 || | || || | ||| || || || || | || ||| || || || ||| Sbjct 1653 GACACAGGACTG--CCGGGATAGGTTTCATAGTAACCCTTTTCTTCAGCCAGCTCGCAAG 1710 Query 71423 TCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 71482 || ||||| || | | ||| || ||||| ||||| | ||||||| | | |||| Sbjct 1711 AAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGCTT 1770 Query 71483 CCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 | || ||| || | | | || | | ||||| | |||||| | |||||||| || | Sbjct 1771 CAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACCTA 1830 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 ||||||||| | ||| | ||| || || ||||||||| | ||||||||| || | Sbjct 1831 GACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTTGA 1890 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 |||| || || ||||| | ||||| |||||||| || ||||| | | || | | Sbjct 1891 TATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCTGGA 1950 Query 71663 AATCAAATCTCCCATCTATTACAAACACGTT---CAAGGCAACAGATGCCAGATTACAAA 71719 | || | || || | |||| | | | ||| |||| || |||| ||||| | Sbjct 1951 AGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAGA 2010 Query 71720 CGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779 | || || |||| || | |||| | |||||| || || | ||||||||||||| Sbjct 2011 CAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTGA 2070 Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839 | || || || ||||| || ||||||||| ||||||| ||||||||||| || || || | Sbjct 2071 TAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAATG 2130 Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 71899 || |||| |||||| | |||| ||| | || || | ||| | | | ||||| ||| Sbjct 2131 GATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATTG 2190 Query 71900 TATTCTTGTATCTCT--TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCC 71957 | ||| | || |||| ||| |||| || | | |||||| | || || || || Sbjct 2191 T-TTC-TCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATCACC 2248 Query 71958 CCAAGCATTGTCTAA-TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCAT 72016 ||| | || | || ||||||| |||||| ||||| | ||| ||||| || |||| | Sbjct 2249 CCATAC-TTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTGT 2307 Query 72017 CATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTT 72075 || ||| || | ||| ||||||||||| | ||||||||| ||| || | || | | | Sbjct 2308 CACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGAGCT 2366 Query 72076 CTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 72135 ||| || || || || |||||| | | ||| | ||| | | |||||||| ||| Sbjct 2367 CTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGTGC 2426 Query 72136 CACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTAT 72195 || ||||||||||| || || | | || || || ||||| || |||||||| | || Sbjct 2427 CATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAA 2486 Query 72196 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 72255 | ||| || || || | || | |||||| || | || ||||| || ||| || || Sbjct 2487 CGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTA 2546 Query 72256 CCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCC 72315 || | ||||| ||| |||||||||| ||| | | ||| || || || || Sbjct 2547 CCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCA 2606 Query 72316 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 | ||||| ||| || || |||||| || || ||||| || || ||| ||||||| Sbjct 2607 GTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCC 2666 Query 72376 ATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 72434 |||| || || || || || ||||||||| ||||| ||| || ||||| || | Sbjct 2667 TTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAG 2725 Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 72494 |||||| || || ||||| | |||||||| || ||||| |||||||| || | Sbjct 2726 AGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGC 2785 Query 72495 TTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552 || |||| | ||| ||| || || || || |||||||| | || ||| || |||||| Sbjct 2786 ATCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCTT 2843 Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612 ||| | | ||| ||| || || | |||||| || || | || || |||||||| Sbjct 2844 TCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAAG 2903 Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTG 72672 | |||||| || || || || || || || | || || || || |||| Sbjct 2904 AAATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGTTTG 2961 Query 72673 TTA--ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGA 72729 | || |||| |||| || ||| | || || || || || || || | ||||| Sbjct 2962 CCAAGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTAGGG 3020 Query 72730 TTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGT 72789 || | |||||| ||| ||| || | |||| | || | || || |||||||| ||| Sbjct 3021 TTGATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTATGT 3080 Query 72790 AGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAA 72849 | || || | || || | || || | | || |||||||| || ||||| || Sbjct 3081 AAGTTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTGAGTAGTAGT-CAT 3139 Query 72850 GT-GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 72908 || || || | || || || || |||| | ||| | ||||| || || | ||| | Sbjct 3140 GTAAGCAGCGGTCTCGGCAGCAAGGTTGTCAAGTTCAATGGTTGTAACACCTTGATAAAC 3199 Query 72909 TCCTTGGATAACCTT 72923 ||| || ||||| Sbjct 3200 GCCTGAAATGACCTT 3214 >seq1825 Length=31147 Score = 116 bits (128), Expect = 5e-21 Identities = 389/603 (65%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 72012 ATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 72071 ||||| | |||| | | |||||||||||||| || ||||||| | | || | ||| | Sbjct 9265 ATCATGACTTACGC--TCCATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACG 9322 Query 72072 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 72131 | | || || ||| ||||||| | || || | || | | | |||| Sbjct 9323 AGCACGTACTTCATCAGCACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAAT 9382 Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191 |||||| ||||| | ||| ||||| | || || || || || ||| || Sbjct 9383 ATGCCAAGGTTCAAGGTACATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTAC 9442 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251 | | ||| |||| |||| | || | | ||| || | |||||||||||||| |||||| Sbjct 9443 AAAACGAGCTGTGTCATTAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATT 9502 Query 72252 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 ||| || | || || ||| | |||| || || | ||| | ||| | || || Sbjct 9503 GGTACCAGCAATGTAAGAACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACC 9562 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 || ||||||||| || || | |||| || |||||||| || || |||||||| Sbjct 9563 AGCAGCTTTAGAGATACGAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATC 9622 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 || |||| | | || |||||||| || | ||| | | || |||||||| || Sbjct 9623 TTCTTTCATCTGGACAAGGAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAA 9682 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 | ||| || | ||| || || || |||| |||| |||| ||| |||| | || Sbjct 9683 GAGGGTGGGTGTAGCATGAGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGC 9742 Query 72492 TGATTCTATATCCCATTG---ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 ||||| ||| ||| ||| || || | || |||||||| | ||| | ||||| Sbjct 9743 ACTTTCTAGATC---TTGACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGG 9799 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 | |||||| ||||| || || || || | ||| |||||| || || ||||| Sbjct 9800 ACGTTCAACAATCTTACCGTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACC 9859 Query 72609 AAA 72611 ||| Sbjct 9860 AAA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115592678640