Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2232 100 3e-16 seq2078 95.1 1e-14 >seq2232 Length=20840 Score = 100 bits (110), Expect = 3e-16 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | ||| || |||| |||||||||||||| || ||||| || Sbjct 284 TGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCA 343 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | | | ||||| | ||||||||||||| |||| |||||||| || || || Sbjct 344 GAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGG 403 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| || ||||| || | | || | | ||| | || ||| Sbjct 404 GGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCG 463 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | ||| | |||||||| || | || || || || || |||||| Sbjct 464 ACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCATA 514 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||||||||| || ||||| || Sbjct 743 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAA 802 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | | | ||||| | ||||||||||||| |||| |||||||| || || || || Sbjct 803 AGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGG 862 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||||| || | | || | | ||| | || ||| ||| Sbjct 863 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACT 922 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | || || ||||| |||||||| Sbjct 923 TCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 >seq2078 Length=27221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||| | |||||||||||| || |||||||| | || Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGT--CTG 1115 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| ||||| | |||||| || ||| | || ||||| || || || || | Sbjct 1116 ATAGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTG 1175 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || ||| ||||| || | | ||| | | || | || ||| | Sbjct 1176 GAATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGA 1235 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | || ||||| || | ||| || || || ||||||||| Sbjct 1236 CTTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCATA 1285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || | ||| | |||||||||||| || |||||||| || Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | | || ||||| ||||| || || || | |||| |||||| ||||| || || Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||||| || | | ||| | | || | || ||| ||| Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACT 1465 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | || || || || | || || ||||| ||||||||| Sbjct 1466 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATA 1513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506996565768480