Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2381 185 1e-41 seq2193 93.3 6e-14 >seq2381 Length=15399 Score = 185 bits (204), Expect = 1e-41 Identities = 558/849 (66%), Gaps = 36/849 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | |||||||||||| | || ||||||||||| | ||||| | || || Sbjct 11460 ATCTGGCAATTCTACAAAAAGGCTGAAGCTTCCTTTTGGACTGCTGAAGAAATTGACTTG 11401 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGA-CTGAAACTGAGCGAGAGTTTATATC 125137 |||||||||| |||||||||||| ||| | | ||| || ||| || || || Sbjct 11400 TCCAAGGACCAACACGATTGGGAGAACAAAATGAACAGCAAC-GAACGATTCTTCATCTC 11342 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 | | ||||||||||||||| | | ||||| | ||||| || || || | | Sbjct 11341 TCGTGTCTTGGCCTTCTTTGCCAGTGCTGATGGTGTAGTCAATGAAAACTTGGTTCAAAA 11282 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 |||| | | || | | || || || | || || || || |||||||| || Sbjct 11281 CTTCTGTGATGAAGTAAAGATCCCTGAAGCCAAATGTTTCTATGGTTTCCAAATTGCTAT 11222 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 ||||||| | || | |||| ||| | ||||||||| ||||| ||| || Sbjct 11221 TGAGAACATCCATGCCGAAACCTACAGTTTGTTGATTGACACCTACATCAAAGATAATCA 11162 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATA---CGTAAAAAGGC 125374 | || | ||| | ||| | || ||||| || | || | ||| ||||| ||| Sbjct 11161 AGAAAAGGAGATGTTGTTTGATGCTATCGAAACCATTCCCTGTATCAAGCGTAA---GGC 11105 Query 125375 TCAATGGGTGATTCG-GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | |||| |||| ||||||| || || | |||| || || || |||| | Sbjct 11104 AGATTGGGC-ATTCAAGTGGATCTCTGGTAACGACTCTTTT---GCTGAGCGATTGGTTG 11049 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | || || || || || || |||||||| || ||| ||||| | ||||| ||||||| Sbjct 11048 CCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCA 10989 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || |||||||| || |||| | |||||| |||| | ||| || || | Sbjct 10988 AGAAGCGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAG 10929 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAG 125611 | || ||| ||||||||| ||| |||| | || || | | || ||| | Sbjct 10928 GTCTTCACACTGACTTTGCTTGTCTCTTGTTCACTCACCTCAAGAAGATTCCTTCTGCCG 10869 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 | | || || || || |||||| || || || | || |||||||| || Sbjct 10868 A---ACGTATCAAGAG-----CATCATTGT---TGAGGCTGTTGGTATTGAACAAGAATT 10820 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 | || || | |||| |||| | ||||||| |||||| ||||| |||||| | || Sbjct 10819 CTTGACTGATGCTTTACCTGTCAACTTGATTGGTATGAACGCTAAGCTTATGTGCCAATA 10760 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAGATTTAC 125786 ||| || || || || |||||| | || |||| ||||| ||||| ||| Sbjct 10759 CATTGAATTCGTCGCCGATCGTTTGATG-----GTTGCCCTTGGCTTTGATAAGATCTAC 10705 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 || |||| || ||||||||||||||| || || || || | || ||||||||||| Sbjct 10704 AATGCCACTAACCCCTTTGATTTCATGGACATGATTTCTCTTCAAGGCAAGACCAACTTC 10645 Query 125847 TTCGAGAAG 125855 || |||||| Sbjct 10644 TTTGAGAAG 10636 >seq2193 Length=22042 Score = 93.3 bits (102), Expect = 6e-14 Identities = 335/525 (64%), Gaps = 18/525 (3%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || || ||||| || || || || || || || ||| | |||| || | || |||||| Sbjct 3416 GAAGGTGATCTCGGACCTGTATATGGTTTTCAATGGCGTCACTTCGGTGCGAAATATGTA 3357 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACT 70183 || ||||| ||||| ||| | ||||| || |||||||| | ||| | | ||||| || Sbjct 3356 GATTGCGATACAGATTATACAGGTCAAGGCGTTGATCAGCTTCAGCAAGTTATTGATACG 3297 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 | |||| ||| ||||| ||| | | || | || | | ||||||||||| ||| | Sbjct 3296 ATTAAGAACAACCCAACCGATCGCCGTATTATTTTGAGTGCCTGGAATCCTGCTGATATT 3237 Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGT--------TTTACTCGTA-C 70294 | ||||| |||| || ||||| | || ||| | | ||| | || | Sbjct 3236 CCTATCATGGCTTTACCTCCTTGTCATTCATTCTGTCAATTCTATGTCTCTACACCTATC 3177 Query 70295 GATGG---------CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTC 70345 |||| || ||||| || || | ||||| || || ||||| || Sbjct 3176 AATGGTGAGCCTGCTAAGTTGTCCTGTGTATTATATCAAAGATCATGTGATATGGGACTA 3117 Query 70346 GGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 ||||| || ||||||||||| ||| || | || || | |||||||| || | || Sbjct 3116 GGTGTGCCATTTAACATTGCCTCTTATGCTCTTTTAACTCGAATGATTGCCCATGTAACT 3057 Query 70406 GGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCAC 70465 | || | | || || |||| || || ||||| | || |||||| | | ||| Sbjct 3056 GATTTGGAGCCTGGAGAATTTATACATACTATGGGCGATACACATGTGTATGTTGACCAC 2997 Query 70466 ATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTT 70525 | || | ||| ||| || || | || || ||||| || || | | || | Sbjct 2996 TTGGAAGGGCTCAAGCAACAAATCCAAAGAGAACCTAGACCATTCCCTACATTAAAGATA 2937 Query 70526 GCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTT 70570 |||||||||| |||||| ||| || || | |||||||||| Sbjct 2936 AATCGTAAAGTTACAAATATAGACGACTTCAAATTCGAAGATTTT 2892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741033133242640