Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2078 116 3e-21 seq2232 111 1e-19 >seq2078 Length=27221 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || | ||| || || || ||||| || |||||||| || | Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||| || || ||| | |||||||||||||| || |||| Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| || ||| || |||| || | ||| ||| || Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACT 1465 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || | ||||||||||||||| || || || || || ||||||||||||||| ||||| Sbjct 1466 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTTAAAAAT 1522 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || |||| | | ||||||||||| Sbjct 1081 ATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTCTAATTG 1140 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | || | ||| |||||||| |||||| |||||||| || ||| || Sbjct 1141 TTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTT 1200 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||| || | ||| ||| || |||| || || ||||| ||||| Sbjct 1201 TTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTTGCCTGT 1260 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||| Sbjct 1261 GAGTGTCTTCACAAAGATTTGCATA 1285 >seq2232 Length=20840 Score = 111 bits (122), Expect = 1e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || || || |||||||| || ||| | ||||||| Sbjct 533 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCC 592 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || |||||| | || | |||||||||||| || || ||||| ||||| Sbjct 593 AACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGG 652 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||||| |||| || | ||| ||| || |||||||| |||||||| Sbjct 653 ATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTG 712 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| ||||||||| Sbjct 713 CCAGTAAGAGTCTTGACAAAGATTTGCATA 742 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || |||||||| || ||||| || ||| | | ||||| Sbjct 760 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 819 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||||| | || | |||||||||||| || || ||||| ||||| Sbjct 820 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTG 879 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || | || |||| ||| ||| || || || || ||||| || Sbjct 880 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTT 939 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || || || || ||||||||||| || Sbjct 940 ACCAGTGAGGGTCTTAACGAAAATTTGCATGTT 972 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || |||||||| || ||||| || ||| | | ||||| Sbjct 304 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 363 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||||| | || | |||||||||||| || || ||||| ||||| Sbjct 364 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTG 423 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || | || |||| ||| ||| || || || || || || || Sbjct 424 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTT 483 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || ||||| |||||| Sbjct 484 GCCAGTAAGAGTCTTAACRAAAATCTGCATA 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362166778837974