Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2232 93.3 3e-14 seq2078 91.5 9e-14 >seq2232 Length=20840 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || |||||||| |||||||| ||||| | | | || || Sbjct 761 ACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCT 820 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| || | |||||| ||||| | ||| || ||||| || || Sbjct 821 AATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGG 880 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| || || || | | ||| | |||| || || || |||| ||| || || || Sbjct 881 ATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTA 940 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA-TGGTTAAT 33382 || || || || || ||||||||||||||||| | | |||||| Sbjct 941 CCAGTGAGGGTCTTAACGAAAATTTGCATGTTAACTAGTTAAT 983 >seq2078 Length=27221 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||||| ||| | ||| || ||||| || || ||||| || || Sbjct 1285 ACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGA 1344 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || | ||||||||| || || |||||||| || || | || Sbjct 1345 TAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGG 1404 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| || || || ||| ||| | || || || ||| Sbjct 1405 AATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAAC 1464 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || || || || ||||| || || || || || |||||||||||||| |||| Sbjct 1465 TTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTTA 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318766667322972