Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2078 109 5e-19 >seq2078 Length=27221 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| |||||||||||||||||| || |||||||| || | || | |||||| Sbjct 1075 CACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTC 1134 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||||||||||| ||| ||||||| | |||||| || || | |||||||| || Sbjct 1135 TAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTG 1194 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||||| || || | ||| |||||| | ||| ||| | || || ||||| Sbjct 1195 AATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTT 1254 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | || || ||||| |||||||| Sbjct 1255 GCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| |||||||||||||||||| || |||||||| || | || |||||| Sbjct 1303 CACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATCTTC 1362 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||| || || || |||| | | |||||||| || | ||||| ||||| Sbjct 1363 TAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTCTTG 1422 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||||| || || | ||| ||||| | ||| ||| | |||||||||||| Sbjct 1423 AATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGTTTT 1482 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || || | || ||||| ||||||||||| |||||| Sbjct 1483 ACCAGTGAGGGTCTTGACGAAAATTTGCATATTTAAA 1519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419572809994734