Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2381 140 3e-28 >seq2381 Length=15399 Score = 140 bits (154), Expect = 3e-28 Identities = 442/682 (65%), Gaps = 5/682 (1%) Strand=Plus/Plus Query 12881 TTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT 12940 || ||||| ||||| || || |||| | ||||| | ||||| ||||| || || || Sbjct 10637 TTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATGAAATCAAAGGGGTTA 10696 Query 12941 TTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCT 13000 | | | ||| || | | | || | | | | ||| | || || || || || Sbjct 10697 GTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAAACGATCGGCGACGAATTCA 10756 Query 13001 ATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTT 13060 ||||| || ||| | | | |||||| || || || || ||||| | ||| || || Sbjct 10757 ATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTTGACAGGTAAAGCATCAGTC 10816 Query 13061 AAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-A 13119 || || | || ||| ||| |||| || || | || ||| ||||| ||||||| | | Sbjct 10817 AAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATG-CTCTTGATACGTTCGGCAGA 10875 Query 13120 TGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATC 13179 ||| || || || | |||| | ||| ||||| ||| ||| | |||||||| Sbjct 10876 AGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGTCAGTGTGAAGACCTTCATC 10935 Query 13180 TCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCA 13239 | || || || ||||| || || || | ||| ||||| || || || || || | ||| Sbjct 10936 ACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGAGACCACGCTTCTTGAGCCA 10995 Query 13240 AAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAA 13299 || |||| ||||| ||||| || || || || ||||| || || ||||| || | ||| Sbjct 10996 GAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACCAA 11055 Query 13300 CCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTG 13359 | ||| || | | | |||| |||||||| ||||| | ||| || | Sbjct 11056 TCGCTCAGCAAAAGAG---TCGTTACCAGAGATCCACTTGAATGCCCAATCTGCCTTACG 11112 Query 13360 TTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAA 13419 || | ||| || |||| || || | ||| || | ||||| | | | ||| Sbjct 11113 CTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCTCCTTTTCTTGATTATCTTT 11172 Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || || || || ||||| || || || |||| | ||| || || || || || ||||| Sbjct 11173 GATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGATGTTCTCAATAGCAATTTG 11232 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 ||||||||| |||||| | || || | | || ||||| | || ||| | || Sbjct 11233 GAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCATCACAGAAGTTTTGAACCAA 11292 Query 13540 GTTTTCGTTAACTATCCCGTCA 13561 |||||| || |||| || ||| Sbjct 11293 GTTTTCATTGACTACACCATCA 11314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430967619189228