Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2381 192 1e-43 seq2078 163 7e-35 seq2232 131 4e-25 >seq2381 Length=15399 Score = 192 bits (212), Expect = 1e-43 Identities = 377/556 (68%), Gaps = 5/556 (1%) Strand=Plus/Minus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 |||||| |||| | ||||| |||||||||| |||||| | || |||| | ||| | Sbjct 11448 TACAAAAAGGCTGAAGCTTCCTTTTGGACTGCTGAAGAAATTGACTTGTCCAAGGACCAA 11389 Query 268805 ATAGATTGGAA----AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGC 268860 |||||| | ||| | || | || | ||| || || || ||| | | | || Sbjct 11388 CACGATTGGGAGAACAAAATGAACAGCA-ACGAACGATTCTTCATCTCTCGTGTCTTGGC 11330 Query 268861 GTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGA 268920 || ||||| | ||||||| | || || ||||| | || | || |||||| | || Sbjct 11329 CTTCTTTGCCAGTGCTGATGGTGTAGTCAATGAAAACTTGGTTCAAAACTTCTGTGATGA 11270 Query 268921 GGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCA 268980 ||| |||| |||||||||| |||||| || || ||||| || ||||| || || || || Sbjct 11269 AGTAAAGATCCCTGAAGCCAAATGTTTCTATGGTTTCCAAATTGCTATTGAGAACATCCA 11210 Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG 269040 | | || | |||||| | || || || || || || | ||||| | |||||| | | Sbjct 11209 TGCCGAAACCTACAGTTTGTTGATTGACACCTACATCAAAGATAATCAAGAAAAGGAGAT 11150 Query 269041 ACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 | ||| | |||| ||| || |||| | | || | || ||||| | || Sbjct 11149 GTTGTTTGATGCTATCGAAACCATTCCCTGTATCAAGCGTAAGGCAGATTGGGCATTCAA 11090 Query 269101 ATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGG 269160 ||||| | || || ||| | || | || ||||| ||||| ||||| ||||| Sbjct 11089 GTGGATCTCTGGTAACGACTCTTTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAAGG 11030 Query 269161 TATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 ||| ||||| || || || |||||| ||||||| ||| | ||||| | || || ||||| Sbjct 11029 TATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCC 10970 Query 269221 AGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || || ||||||||||||||| | || | | || |||||| | ||| ||||| || Sbjct 10969 TGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTTGC 10910 Query 269281 TTGTTTATTATTTACT 269296 |||| | || || ||| Sbjct 10909 TTGTCTCTTGTTCACT 10894 >seq2078 Length=27221 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||| ||||||||||||||| || || ||||| ||||||| | ||| || Sbjct 1072 AAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATC 1131 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| |||||| || |||||||| || | |||||| || || || || ||||||||||| Sbjct 1132 TTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATC 1191 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| | | ||| | ||| || |||||||| || || Sbjct 1192 TTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGT 1251 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || ||||| || ||||| Sbjct 1252 TTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || ||||||| ||||||||||||||| || || ||||| Sbjct 1283 ATACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCT 1342 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||||||||| ||||| || ||||| | | |||||||| || Sbjct 1343 GATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGT 1402 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||||||| || || ||||| | | ||| | ||| Sbjct 1403 GGAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCA 1462 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || |||||||| || || || || || || ||||| || Sbjct 1463 ACTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 >seq2232 Length=20840 Score = 131 bits (144), Expect = 4e-25 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 104323 TTTATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 ||| |||||| || || | || | ||| || | || | ||||||||||| || ||| Sbjct 275 TTTGTTTATTGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATA 334 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || |||||||| |||| | || ||||||| |||||| |||||||| || || | ||| Sbjct 335 TTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGT 394 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || || || || || ||||| || || || |||||| || || || || | || ||| Sbjct 395 TGGTCTGGGGGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCG 454 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || || | || |||||||| |||||||| || || || || |||||||| Sbjct 455 GAGGATTCGACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || ||||| |||||||| |||| | || ||||||| |||||| ||| Sbjct 773 GTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCA 832 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| || || || || ||||| || || || |||||| || Sbjct 833 GCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 892 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | ||| || || | || || ||||||||||| || || Sbjct 893 ACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTACCAGTGAGGGTC 952 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || ||||| || Sbjct 953 TTAACGAAAATTTGCATGTT 972 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| |||| | |||||||| | || || ||| Sbjct 545 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCCAACTGCTTACCA 604 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||||| || ||||| || ||||| || || || |||||| ||| Sbjct 605 GCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGGATCTTTTGCTTT 664 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | | ||| | ||| ||||||| || || || || |||||||| || Sbjct 665 ACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTGCCAGTAAGAGTC 724 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 725 TTGACAAAGATTTGCAT 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151356887050312