Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2078 89.7 5e-13 >seq2078 Length=27221 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | |||||||| || || | ||| || || | |||| | || ||| Sbjct 1075 CACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTC--TGATAGAGAGCGACCATCT 1132 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || | ||||| ||| |||| || | | || || ||||| |||||||||||||| || Sbjct 1133 TCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCT 1192 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| ||| ||||||| | | || |||| | ||||| || | ||||| ||| Sbjct 1193 TGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTT 1252 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| ||||| Sbjct 1253 TTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| | || | ||||| || | |||||||| || || | ||| | Sbjct 1278 TTTGCATACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGT 1337 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | || | | ||| || || || ||||| | || || || | ||| |||| Sbjct 1338 AGTCTGATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGAT 1397 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||| ||||| | ||| ||| ||| ||| | | | |||| | Sbjct 1398 CTGGTGGAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGG 1457 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 || || |||| || |||||||| ||||| || || || || || || ||||| ||| Sbjct 1458 ATTCAACTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTTA 1517 Query 95013 CAA 95015 || Sbjct 1518 AAA 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275431357040