Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2120 178 2e-39 seq2204 161 2e-34 >seq2120 Length=25072 Score = 178 bits (196), Expect = 2e-39 Identities = 367/538 (68%), Gaps = 6/538 (1%) Strand=Plus/Plus Query 193634 AGTTGAACCTGCTGAGATCTATAATCTTGG-TGCTCAAAGTCATGTTAAAGTTTCCTTTG 193692 |||| |||| |||| | || || ||||| ||||||| ||| || || ||||| || | Sbjct 11161 AGTTCAACCCACTGAAGTATACAA-CTTGGCTGCTCAATCTCACGTCAAGGTTTCTTTCG 11219 Query 193693 AGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAG 193752 | ||| | || || ||| | |||||||||| | || |||||| | | | || || Sbjct 11220 ATATGTCTGAATACACTGGTGATGTTGATGCCCTTGGTACTCTTCGTCTCTTGGATGCCA 11279 Query 193753 TTCGTATGT-TGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTG 193811 | |||| | ||| || || | |||||| |||| || || |||||| ||||| Sbjct 11280 TCCGTACTTGTGGTCTTGCTGACCG-TGTTCGTTTCTACCAAGCTTCTACCTCTGAACTC 11338 Query 193812 TATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCT 193871 || ||| ||| | | || || | | ||||||||||||||| | || || ||||| Sbjct 11339 TACGGTAAGGTTGTCGAAACCCCTCAAAAGGAAACCACACCATTTTACCCTCGTTCTCCC 11398 Query 193872 TATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGA 193931 |||||||| || ||| | |||||||| ||||| | || || ||||| || |||| Sbjct 11399 TATGGTGTTGCCAAGCTCTATGGTTACTGGATTGTAGTCAACTACCGTGAATCCTATGAC 11458 Query 193932 TTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTT 193991 | | || || ||||| |||||||| ||||||||||| | | ||| || || Sbjct 11459 ATGTATGCCTGTAACGGTATCCTCTTCAACCACGAATCTCCTCGTCGTGGTCGTACTTTC 11518 Query 193992 GTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGAT-TACAGAAGATTCT 194050 || || ||||||||||| | | | | || | || || |||| | || | ||| Sbjct 11519 GTCACACGTAAGATTACTCGTGCTGTTGCTGATAT-TCATTTGGGTCGTCAAGACTGTCT 11577 Query 194051 TTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGC 194110 || |||||||| || |||| ||| | |||||||| || || ||||||||||||| Sbjct 11578 CTACCTTGGTAACATTGATGCCAAGCGTGATTGGGGTCATGCCCGTGATTATGTTGAAGG 11637 Query 194111 GATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 |||||| | ||| | ||||| || | || | || | ||| | ||||| |||||| Sbjct 11638 TATGTGGCTCATGCTTCAACAAGACAAGCCTCAAGACTTTGTCTTGGCTACTGGTGAA 11695 >seq2204 Length=21180 Score = 161 bits (178), Expect = 2e-34 Identities = 522/792 (66%), Gaps = 30/792 (4%) Strand=Plus/Plus Query 193580 TCTTCATTATGGAGATCTAACTGAT----CCTGTAAATGTT-ATGG-GTGTCATTAGGGC 193633 |||||||||||| |||||||||||| ||||| |||| || |||||| | Sbjct 6106 TCTTCATTATGGTGATCTAACTGATTCTACCTGTCT-TGTTCATATTGTGTCAAGTATAC 6164 Query 193634 AGTTGAACCTGCTGAGATCTATAATCTTGGT-GCTCAAAGTCATGTTAAAGTTTCCTTTG 193692 || ||| |||| ||||| || ||||| |||||| |||||| || || || |||| Sbjct 6165 AG-----CCTACTGAAATCTACAA-CTTGGCAGCTCAATCTCATGTCAAGGTATCATTTG 6218 Query 193693 AGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAG 193752 | ||| | |||||||| | |||||||||| | || || || | | | || || | Sbjct 6219 ATATGTCTGAGTATACAGGTGATGTTGATGCACTCGGTACACTCCGTCTGTTAGATGCTG 6278 Query 193753 TTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGT 193812 |||||| | || | | ||||||| ||||||| || ||||| ||| ||| Sbjct 6279 TTCGTACTTGCGGCCTCTCCGATCGTGTTCGCTTCTATCAAGCTTCTACTTCTGAATTGT 6338 Query 193813 ATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTT 193872 | || ||| | | || || | | |||||||| || || | || || || || | Sbjct 6339 ACGGAAAGGTTGTCGAAACGCCTCAAAAGGAAACCACGCCTTTCTACCCTCGTTCACCCT 6398 Query 193873 ATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG-GA 193931 ||||||| |||||| | ||||| ||||||||| | ||||| ||||| || |||| || Sbjct 6399 ATGGTGTTGCAAAGCTTTATGGCTATTGGATCGTTGTCAATTACCGTGAATCTTATGAGA 6458 Query 193932 T---TCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACA 193988 | | || || | ||| |||||||| ||||| |||||||| | | || || Sbjct 6459 TGTATACATGCAA----TGGCATTCTCTTTAATCATGAATCTCCTCGTCGTGGCCGTACC 6514 Query 193989 TTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGA-TTACAGAAGAT 194047 ||||| || |||||||||||| | | | | || | || | | ||| | |||| | Sbjct 6515 TTTGTCACACGTAAGATTACAAATGCTGTTGCTGATATTCATTTGGGACGTCAAGAATGT 6574 Query 194048 TCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGA 194107 | | ||| | || ||| || | || ||| | |||||||| || || |||||| | || Sbjct 6575 T-TGTATTTGGGCAATATTGACGCCAAGCGTGATTGGGGTCATGCTCGAGATTATATCGA 6633 Query 194108 AGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 || |||||| | ||| | ||||| || | || || || | ||| | || || || || Sbjct 6634 AGGAATGTGGCTTATGCTTCAACAAGAGAAGCCTGACGACTTTGTCTTAGCCACGGGAGA 6693 Query 194168 ACAGTATTCTGTTAGAGACTTTG-TGAATGAAGCAGCACCCTATT-TTGGTTTTAAACTA 194225 | | || | || ||| |||| |||| ||| || || |||| || | Sbjct 6694 AACGCATACAGTCAGAAGTTTTGTTGAA--AAGGCTTTCCAGGTTACTGGTCGTACTATT 6751 Query 194226 GAATGGATGGGTGAAGGTGAAGACGAGATTGCTCTCGAT-TGGAATACTaaaaaaaCAAT 194284 | |||| |||||||||| ||||| ||| || |||| ||| | || | | Sbjct 6752 GTATGGGAAGGTGAAGGTGTTAACGAGGTTGGTCGCGATAAGGACTCGGGCAAGATTCGT 6811 Query 194285 CATCGGAATCAACCCTAGATACTTCAGACCTGCAGAAGTGGATTCATTATTAGGTGATGC 194344 || | ||| |||| | ||||| | ||||| ||||| |||| || || || ||| | Sbjct 6812 GTTC-GTATCGACCCCAAGTACTTTCGTCCTGCTGAAGTTGATTTGTTGTTGGGCGATCC 6870 Query 194345 TACAAAAGCAAA 194356 ||| || ||||| Sbjct 6871 TACTAAGGCAAA 6882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807526794245840