Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq244 394 1e-104 seq2381 237 2e-57 seq1825 123 3e-23 >seq244 Length=4003 Score = 394 bits (436), Expect = 1e-104 Identities = 1371/2116 (65%), Gaps = 40/2116 (2%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||||||||| || || || ||||| ||| || || || |||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | | | || || || || |||||||| | |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 62205 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62261 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 62262 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62321 | ||| ||| | ||||||| ||||| ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 || || || || | ||| ||||| |||| | || | ||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 || || ||||| | | ||||| ||||| ||||||| || || ||||| |||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 62499 || || ||||| | || | || ||| ||||| | ||||| || || ||| || Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACC--ATGTTGAGCAATTTTTTCCTT--GAGCTT 1591 Query 62500 --CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT 62557 |||||| ||| || || | || || ||| | | ||| || Sbjct 1592 AACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTT 1651 Query 62558 ACTGGCGTACGAT--CCTACATATGTATCGTA-TGGTCCTTCCTTCT-CAGCTAGTTCAC 62613 | | | || || ||| || || || | |||| |||| |||| || || | Sbjct 1652 G--GACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTT--TTCTTCAGCCAGCTCGC 1707 Query 62614 AACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTG 62673 || || ||||| ||| ||| ||| || ||||| || || | |||| || | | | Sbjct 1708 AAGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAG 1767 Query 62674 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACAC 62733 |||| | ||| || | | | || | | ||||| | ||| || | |||||||||| Sbjct 1768 CTTCAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACAC 1827 Query 62734 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62793 | | ||||||||| | || | ||| || ||| ||||||||| | ||||||||| | Sbjct 1828 CTAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGT 1887 Query 62794 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62853 | ||||| || || ||||| | ||||| |||||||| || ||||| | || || Sbjct 1888 TGATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCT 1947 Query 62854 GAAAATCAAATCGCCCA---TCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTAC 62910 | || || | | || | | ||||| || ||| |||| || |||| |||| Sbjct 1948 GGAAGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTAC 2007 Query 62911 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62970 | || || || |||| || | |||| | || || || || | |||||||||| Sbjct 2008 AGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACT 2067 Query 62971 TGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 63030 ||||||| || || ||||| || ||||||||| ||||||| ||||||||||| || |||| Sbjct 2068 TGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGA 2127 Query 63031 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 63090 ||||| |||| |||||| | |||| ||| | || || | ||| | | | ||||| | Sbjct 2128 ATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGA 2187 Query 63091 TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTC 63150 || | | | ||| | ||| |||| || | || ||| | || || || | Sbjct 2188 TTGTTTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATCAC 2247 Query 63151 CCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63209 |||| || || | || ||||||| ||||| ||||| | ||| ||||| || || | Sbjct 2248 CCCATAC-TTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTG 2306 Query 63210 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGT 63268 || || || | ||| ||||||||||| | ||||||||| ||| || | || | | Sbjct 2307 TCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGAGC 2365 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 |||| ||| || || || |||||| | | ||| | ||| | | |||||||| || Sbjct 2366 TCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGTG 2425 Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388 ||| ||||||||||| || || | | || || || ||||| || |||||||| | || Sbjct 2426 CCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATA 2485 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 | ||| || || || | || | |||||| || | || || || || ||| || || Sbjct 2486 ACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGT 2545 Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508 ||| | ||||| ||| |||||||||| || | | ||| || || || || Sbjct 2546 ACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGC 2605 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 | ||||| ||| || || |||||| || || |||||||| || || |||||| Sbjct 2606 AGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATC 2665 Query 63569 GATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63627 |||| || || || || || ||||||||| ||||| ||| || ||||| || | Sbjct 2666 CTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAA 2724 Query 63628 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63687 |||||| || || ||||| | |||||| | || ||||| |||||||| || | Sbjct 2725 GAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGG 2784 Query 63688 AGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63745 || |||| | ||| |||||| || || || |||||||| | || || || ||||| Sbjct 2785 CATCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCT 2842 Query 63746 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 |||| | | ||| || || || | |||||| || || | || || |||||||| Sbjct 2843 TTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAA 2902 Query 63806 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | |||||| || || || || || || || | ||||| || || ||| Sbjct 2903 GAAATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGTTT 2960 Query 63866 GTTA--ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGG 63922 | | || |||| |||| || ||| | || || || || || || || | ||||| Sbjct 2961 GCCAAGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTAGG 3019 Query 63923 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 63982 || | |||||| ||| ||| || | |||| | || | || || |||||||| || Sbjct 3020 GTTGATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTATG 3079 Query 63983 TAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACA 64042 || || || | || || | || || | | || ||||| || || ||||| || Sbjct 3080 TAAGTTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTGAGTAGTAGT-CA 3138 Query 64043 AGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATA 64101 || || || | ||||| || || |||| | ||| | ||||| || || | ||| | Sbjct 3139 TGTAAGCAGCGGTCTCGGCAGCAAGGTTGTCAAGTTCAATGGTTGTAACACCTTGATAAA 3198 Query 64102 TTCCTTGAATAACCTT 64117 ||| ||| ||||| Sbjct 3199 CGCCTGAAATGACCTT 3214 >seq2381 Length=15399 Score = 237 bits (262), Expect = 2e-57 Identities = 569/854 (67%), Gaps = 25/854 (3%) Strand=Plus/Plus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 |||||| ||| ||||| || || || || || || || |||| | || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||||||||||| || || || |||| || || || | ||| || | || ||||| Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 | ||| ||||||||||| || ||| ||| | | | ||||| || || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 || || | ||| |||| | |||||||||||||| || || || || || | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGAT-GC 10856 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAAT-------AAATGTTTAAACATCAAACATG 33307 ||| | | | | |||| || | ||| | || | |||| | ||| | Sbjct 10857 TCTT---GATACGT---TCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAG 10910 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 | || || ||| ||||| || || | || || |||||||| || || || | || | Sbjct 10911 CAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAG 10970 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||| || |||||||| || ||||| || || || || ||||| ||||| |||||||| | Sbjct 10971 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATAC 11030 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33487 |||| || ||||||||||||| | || ||| || || | || | || ||||||| Sbjct 11031 CTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTACCAGAGATCCACT 11090 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | |||||||| ||||| || | ||| || || ||||| || |||| ||| | Sbjct 11091 TGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACA 11150 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | ||||| | | ||||||| | || || || ||||| | ||| || |||| | || Sbjct 11151 TCTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCAT 11210 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | ||||| ||||| || || || || || ||||||||| | || || | |||| ||||| Sbjct 11211 GGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTT 11270 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT---CACTGGCTGCAAAAA 33724 | ||| || || |||| |||||||| |||| || | ||||| ||||| | Sbjct 11271 CATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTG---GCAAAGA 11327 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCA 33780 | ||||| ||| | || || || ||||| || |||| | ||| || |||||| Sbjct 11328 AGGCCAAGACACGAGAGATGAAGAATCGTTCGT-TGCTGTTCATTTTGTTCTCCCAATCG 11386 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 | || || || | || | |||||| | |||||||| || || || |||||||| Sbjct 11387 TGTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTG 11446 Query 33841 TACATGTTCCAGAT 33854 || | | |||||| Sbjct 11447 TAGAATTGCCAGAT 11460 >seq1825 Length=31147 Score = 123 bits (136), Expect = 3e-23 Identities = 379/585 (65%), Gaps = 6/585 (1%) Strand=Plus/Plus Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 |||||||||||||| || ||||||| | | || | ||| | | | ||| || Sbjct 9281 CATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATCAGC 9340 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 ||| ||||||| | || || | || | | | |||| |||||| ||||| | ||| Sbjct 9341 ACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTA 9400 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 ||||| | ||| || || || || ||| || | | ||| |||| ||| Sbjct 9401 CATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTCATT 9460 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 | | || | | ||| || | |||||| || ||| ||||||||||||| | || || Sbjct 9461 AAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTAAGA 9520 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 ||| | |||| || || | ||| | ||| | || || || ||||||||| Sbjct 9521 ACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACCAGCAGCTTTAGAGATACG 9580 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || || | |||| |||||||||||||| || || ||||| || |||| | | || Sbjct 9581 AGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGACAAG 9640 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 |||||||| || | ||| | | || |||||||| || | ||| || | ||| || Sbjct 9641 GAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCATG 9700 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 || || |||| || | |||| ||| |||| | || |||| ||| ||| Sbjct 9701 AGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATC---TTG 9757 Query 63704 ---ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 ||| || || | || |||||||| | ||||| ||||| | |||||| ||||| Sbjct 9758 ACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTACC 9817 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 ||| || || || | ||| |||||| || || |||||||| Sbjct 9818 GTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925287832240