Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2078 98.7 1e-15 seq2232 82.4 7e-11 >seq2078 Length=27221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | || || ||| | ||||| | ||| | ||||| Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | || || | ||||| ||||||||| || |||||||| || || || || ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| | |||||||||| | ||||||| | | | ||||| ||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||||||||| | |||||||| || Sbjct 1104 ATCCAGAAAGAATCTACACTACATCTGGTGCT 1073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || | ||||| ||| | || ||| | ||| | ||||| Sbjct 1515 AATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATCC 1456 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || | || || | || || ||||||||| ||||| ||||| || || || ||| Sbjct 1455 TCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAGAT 1396 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 |||||| | | |||| || || || ||||| ||||||| | | | | | ||||| Sbjct 1395 CAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCT-CTTTATCAGACTA 1337 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||||||||| | |||||||| || | |||||||| || Sbjct 1336 CAACATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTTAGAGGTGG 1286 >seq2232 Length=20840 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || | ||||| || | ||||| | ||| | ||||| Sbjct 972 AACATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCC 913 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||| |||| ||| | ||||| |||||||| ||||| ||||| || || || || Sbjct 912 TCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGAC 853 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || || | | || |||||| | ||||||| | | ||||| Sbjct 852 CAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTAC 793 Query 26946 AACATTCAAAAAGAATCTAC 26965 || || |||||||||||||| Sbjct 792 AATATCCAAAAAGAATCTAC 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478645563050080