Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq244 425 1e-113 seq1825 123 6e-23 seq2381 105 2e-17 >seq244 Length=4003 Score = 425 bits (470), Expect = 1e-113 Identities = 1148/1741 (66%), Gaps = 23/1741 (1%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||||||| | ||| |||| | || || ||| || | |||||||||||| ||||||| Sbjct 2863 ATCAATGGTAAGGTTGCTGAAAGACCACAACATTTGATCATGCGTGTTGCTGTTGGTATT 2804 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| || ||| | |||||||| ||||| ||||| || ||| | || ||| || Sbjct 2803 CATGGCAACGATATCGATGCCGCCATTGAGACATACAACCTTATGTCTGAACGTTACTTT 2744 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || |||| || || | | ||||||||| |||| | ||| || |||||||||||| Sbjct 2743 ACTCATGCCAGTCCTACTCTTTTCAATGCTGGTACTCCTCGTCCTCAAATGTCTTCTTGC 2684 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA-TTG 363668 || | | | |||||||| ||||| ||||| ||||||| || || ||||| || ||| Sbjct 2683 TTCTTGTTGACTATGAAGGATGATTCTATCGAAGGTATCTACGAAAC-CTTAAAAATTTG 2625 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCAC 363727 ||||| ||||| |||| ||| || || || ||| | | || | ||||| ||||||| Sbjct 2624 TGCTCAAATTTCTAAGACTGCTGGTGGTATCGGTTTGAACG-TGCACAACATTCGTGCCA 2566 Query 363728 AGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTG 363787 | | ||| ||| || || || || || ||||| || | |||||| | |||| Sbjct 2565 ATGGCTCTTATATTGCTGGTACTAACGGTTATTCTAATGGCCTTTTGCCCATGTTGCGTG 2506 Query 363788 TGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTG 363847 | || |||||||||| | || || || |||||||| ||||| || || |||| Sbjct 2505 TCTTCAACAATACTGCTCGTTATGTTGATCAGGGTGGTAACAAGCGTCCCGGTGCCTTTG 2446 Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT-GAGCTCCGGAAAAAC 363906 ||||||| | || || || | |||| |||| | |||||| || | | || ||| Sbjct 2445 CTATGTACTTGGAACCATGGCACCCTGATA-TTTTCACTTTCTTAGATTTGAGAAAGAAC 2387 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || ||||| ||| | | || ||||| |||||||||| |||||||| |||| | Sbjct 2386 TTTGGTAAAGATGAAATTAGAGCTCGTGACTTGTTCTATGCTCTTTGGGTACCTGATCTC 2327 Query 363967 TTTATGAAGCGCGT-GGAGGCA--GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || ||| |||| || | | || ||| ||| ||||| | || || || | ||| | Sbjct 2326 TTCATGGAGCGTGTACGTGACAATGGT--GAA-TGGTCCTTGTTCTGTCCTAATGAAGCT 2270 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || |||| || ||||||||||| || | |||||| ||||||||||||||||| | Sbjct 2269 CCTGGACTTTGTGAAGTATGGGGTGATGAATTTGTTGCATTATACGAAAAGTATGAAAAG 2210 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 || || | ||| | | ||||| ||||| || | |||| ||| ||| | || | Sbjct 2209 GAAGGCAGAGCTAGAGAAACAATCAAGGCACAAAAATTGTGGTATGCTATCCTTGAAGCT 2150 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || | ||| || || | || | ||| | || || ||| | || ||| | ||| ||| Sbjct 2149 CAAACTGAAACCGGTAATCCATTCATGCTCTATAAGGATGCCTGTAACAGAAAGAGTAAC 2090 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| || | ||||| || || || ||| | ||||| || ||| |||||||| | Sbjct 2089 CAGCAAAACTTGGGTACTATCAAGTGTAGTAACTTGTGTACAGAAATTGTTGAATACTCT 2030 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTGTA 364320 || || || ||| || |||||| | || || || || | || | | |||| Sbjct 2029 AGCCCTGATGAAGTTGCTGTCTGTAACTTGGCTTCCATTGCTTTGCCCACCTTTGTTGTC 1970 Query 364321 AAAGATGGTACTTTTGACCACCAGCATCTTTATGACG----TAACCTATCATGCTACTTG 364376 || || | || ||| |||| | | |||| | ||| || || ||| | Sbjct 1969 AACCGTGAAAGTTACGACTTCCAGAAGTTGCATGATGTCGTTAAAGTA--AT--CACTAG 1914 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 || | | ||| | ||||| | || |||||||| | |||||| || || || || Sbjct 1913 AAACTTGAATAAGATCATCGATATCAACTATTATCCTGTCATTGAAGCTGAACGCTCAAA 1854 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 | |||||| ||||| || ||||| ||||| || || ||||| ||| |||||| | | Sbjct 1853 CAAGCGTCACCGCCCTATCGGTCTAGGTGTTCAAGGTCTCGCAGACACATTTATGTTAAT 1794 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 ||| | || || ||||| ||||| ||| || |||| | || ||||||||||| Sbjct 1793 GAAGTTTGCTTTCGATTCTCCTGAAGCTAAGCAACTCAATATTCAAATTTTTGAAACAAT 1734 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 ||| || || | ||||| || || |||| || ||||| | || || Sbjct 1733 CTATCACGCTGCTTTAGAAGCTTCTTGCGAGCTGGCTGAAGAAAAGGGTTACTATGAAAC 1674 Query 364617 TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC 364676 ||| || ||| | || |||| ||| || | |||| | ||||||||||| || Sbjct 1673 CTATCCCGGCAGTCCTGTGTCCAAGGGTGTATTGCAATATGATATGTGGAATGTCACTCC 1614 Query 364677 ATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 ||| || ||| | |||| || ||| || || | |||||| ||| || Sbjct 1613 CACTGACCTCTGGGATTGGGTTAAGCTCAAGGAAAAAATTGCTCAACATGGTGTTCGTAA 1554 Query 364737 CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGA 364796 ||| ||| | || || ||||| || |||||||| | || ||| | || ||| || Sbjct 1553 CTCACTCTTGGTTGCTCCTATGCCAACTGCTTCTACCTCTCAAATCTTGGGTTTCAATGA 1494 Query 364797 GTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCC 364856 || |||||||| | || ||| || ||| | || || |||||| | || ||||| | Sbjct 1493 ATGTTTCGAACCTTACACCTCCAACCTCTATACTCGTCGTGTTCTTGCTGGCGAATTCCA 1434 Query 364857 GGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCAT 364916 | || || | || | |||||| | || || ||||| || | Sbjct 1433 AATTGTCAACCCATGGCTCTTGAAGGATTTGGTTGAAATGGGTTTGTGGAACGATGATGT 1374 Query 364917 GAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGA 364976 |||||| ||||| | | | |||||| ||||| ||||||||||| |||| || | Sbjct 1373 CAAGAACATGATCATGTCTGATGGTGGTTCAGTGCAAAACATTCCAGGTATTCCTCAAAA 1314 Query 364977 TCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGC 365036 ||||| || |||||||| || |||||| | ||| || | |||||||||| Sbjct 1313 GTTGAAGGACATCTACAAAACAGTCTGGGAATTGAGTCAGCGTACATTGGTTGATATGGC 1254 Query 365037 GGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCC 365096 || ||||| ||||||| || ||| || || || || | ||||| || | || Sbjct 1253 TGCTGATCGTGGTGCTTACATTGATCAAAGTCAAAGTTTGAATATCTTCATTGCTGAACC 1194 Query 365097 AACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || | || | ||| ||||| ||||| || ||| || ||||| ||||| || Sbjct 1193 TAACTTTGGTAAATTGACAAGTATGCACTTCTATGGTTGGCAAAAGGGTCTCAAGACCGG 1134 Query 365157 T 365157 | Sbjct 1133 T 1133 >seq1825 Length=31147 Score = 123 bits (136), Expect = 6e-23 Identities = 370/557 (66%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| ||| | ||||||||||| || || | ||| | |||||||| ||| |||||||| Sbjct 9823 ATCAACGGTAAGATTGTTGAACGTCCTCAATACATGATTATGCGTGTAGCTCTTGGTATC 9764 Query 363490 CATTGCCCGGATGTTGA---TGCCGCGATTGAA-ACATATAAGCTTCTAAGTGCTCGTG- 363544 ||| | | ||| | || |||| || || ||||| | || | || ||| Sbjct 9763 CATGGTCAAGATCTAGAAAGTGCC----TTCAAGACATACGATCTCAT--GTCCTCCAAA 9710 Query 363545 TATT-CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCT 363603 |||| ||| || || || || || | | |||||| || || | ||| || || | || Sbjct 9709 TATTTCACTCATGCTACACCCACCCTCTTCAATGCGGGTACACCTAAGCCTCAATTATCC 9650 Query 363604 TCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAG 363663 || || ||| | | ||||| || ||| ||||| ||||||| |||||| |||| Sbjct 9649 AGCTGTTTCCTTGTCCAGATGAAAGAAGATAGTATCGAAGGTATCTATGACACT-TTAAC 9591 Query 363664 AAT-TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG 363722 || ||||||| ||| || || ||| || || | ||||| || |||| || | || Sbjct 9590 AACCTGTGCTCGTATCTCTAAAGCTGCTGGTGGTGTCGGTGTCTCATTCCAAAAGATCCG 9531 Query 363723 TG-CACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATG 363780 || | | | ||||||| || || || ||| || ||||| | || || ||| Sbjct 9530 TGGCTCTGGTTC-TTACATTGCTGGTACCAATGG-TACATCCAATGGTATTGTGCCTATG 9473 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||||||| ||| | | || || | | || || ||||| || ||||| || || Sbjct 9472 CTTCGTGTCTTTAATGACACAGCTCGTTTTGTAACTCAAGGTGGTGGTAAGCGTAATGGT 9413 Query 363841 GCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGG 363900 ||||| ||||| || || ||| ||| ||| | ||||| ||| | || || | Sbjct 9412 AACTTTGCCATGTACCTTGAACCTTGGCATATTGATGTCTTTGACTTTTTGGAACTAAGA 9353 Query 363901 AAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 || || || || ||| | ||||| |||||| |||||| | |||||||||||| Sbjct 9352 AAGAATCAAGGTGCTGATGAAGTACGTGCTCGTGATTTGTTCTTGGGTCTTTGGGTTTCT 9293 Query 363961 GACCATTTTATGAAGCG 363977 || | |||||| |||| Sbjct 9292 GATCTCTTTATGGAGCG 9276 >seq2381 Length=15399 Score = 105 bits (116), Expect = 2e-17 Identities = 433/669 (65%), Gaps = 19/669 (3%) Strand=Plus/Minus Query 22290 CCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAAC 22349 ||| || |||| ||||||||||||| | ||||| ||||| || | || || ||||| Sbjct 11260 CCCTGAAGCCAAATGTTTCTATGGTTTCCAAATTGCTATTGAGAACATCCATGCCGAAAC 11201 Query 22350 ATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAAC-TTATTCC 22408 || | || || | | | | | ||||||| | ||| || || | || || Sbjct 11200 CTACAGTTTGTTGATTGACACCTACATCAAAGATAATCAAGAA-AAGGAGATGTTGTTTG 11142 Query 22409 GCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGA 22468 || || ||||||| | || ||| ||||||||||||||| | || ||||| Sbjct 11141 ATGCTATCGAAACCATTCCCTGTATCAAGCGTAAGGCAGATTGGGCATTCAAGTGGAT-- 11084 Query 22469 ACAATG--AACG-TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTT 22525 | || |||| || || || || || | |||| ||||||| || ||||| || | Sbjct 11083 -CTCTGGTAACGACTCTTTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAAGGTATCT 11025 Query 22526 TCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTC 22585 |||| ||||| ||||| | ||||| ||||| || || |||| | ||||| ||| Sbjct 11024 TCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTT 10965 Query 22586 TAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTA 22645 | || || || || || | || | || ||||| |||||||| || || ||||| ||| Sbjct 10964 TGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTTGCTTGTC 10905 Query 22646 TGCTATATCGGAATCATATCATTCATAAACTTCCATATG--AAACTGTA-CTTGA-TATT 22701 | || || | ||| ||| | || |||| | || ||| ||| | || || Sbjct 10904 T-CTTGTTC--ACTCACCTCA---AGAAGATTCCTTCTGCCGAAC-GTATCAAGAGCATC 10852 Query 22702 ATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTC 22761 ||| | || |||| |||||| ||| | || || ||||| || | | Sbjct 10851 ATTGTTGAGGCTGTTGGTATTGAACAAGAATTCTTGACTGATGCTTTACCTGTCAACTTG 10792 Query 22762 ATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTA 22821 |||||||| || || | ||| | ||| ||| |||| || || |||||| | | Sbjct 10791 ATTGGTATGAACGCTAAGCTTATGTGCCAATACATTGAATTCGTCGCCGATCGTTTGATG 10732 Query 22822 ATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTT 22881 || | || || | || ||| || || | | ||| || ||||| | ||||| | Sbjct 10731 GTTGCCCTTGGCTTTGATAAGATCTACAATGCCACTAACCCCTTTGATTTCATGGACATG 10672 Query 22882 ATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCA 22941 ||||| ||| |||| |||||||| ||||| || || | ||| ||| |||||| || Sbjct 10671 ATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTGTTTCTGACTACCAACGTGCT 10612 Query 22942 GGTGTTATG 22950 ||||| ||| Sbjct 10611 GGTGTCATG 10603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303306608400548