Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2078 95.1 1e-14 >seq2078 Length=27221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || || || || | ||||| ||| | |||||| | ||||| || || Sbjct 1515 AATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATCC 1456 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || | || || | || || ||||||||| ||||| ||||| || || || ||| Sbjct 1455 TCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAGAT 1396 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 ||||| | |||||| || || |||||||| ||||||| | | | | | | || || Sbjct 1395 CAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCT-CTTTATCAGACTA 1337 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || |||||||||||| | ||| | ||| Sbjct 1336 CAACATCCAGAAAGAATCTACACTACATCTGGTG 1303 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | || || ||| | || || | |||||||| || Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || | || || | ||||| ||||||||| || |||||||| || || || || ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| | |||||| ||| | ||||||| | | || || ||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || |||||||||||| | ||| | ||| Sbjct 1104 ATCCAGAAAGAATCTACACTACATCTGGTG 1075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429921255076170