Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2232 116 2e-21 seq2078 105 4e-18 >seq2232 Length=20840 Score = 116 bits (128), Expect = 2e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || || ||||| |||||||| |||| Sbjct 741 TACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAG 800 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || ||||||||||| || ||||| || || |||||||| || | || Sbjct 801 AAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGG 860 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || |||||||| || |||| | | || ||| | Sbjct 861 GGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGA 920 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || ||||| || | ||| || ||||| || |||||||| Sbjct 921 CTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATGTT 972 Score = 105 bits (116), Expect = 4e-18 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||||| ||||| || || ||||| |||||||| ||||| Sbjct 286 ACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGA 345 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || ||||||||||| || ||||| || || |||||||| || | ||| Sbjct 346 AAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGG 405 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || |||||||| || |||| | | || ||| || Sbjct 406 RATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGAC 465 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || ||||| || || || | || || || || |||||||| Sbjct 466 TTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 >seq2078 Length=27221 Score = 105 bits (116), Expect = 4e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | ||||| ||| || || || || || || ||||| || | Sbjct 1284 TACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTG 1343 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || | || |||| ||| ||||| || || || | ||||||||||| | | Sbjct 1344 ATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTG 1403 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| |||||||| || || | | | ||| ||||| Sbjct 1404 GAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAA 1463 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| | ||||| |||||||| || | ||| || ||||| || ||||| ||| Sbjct 1464 CTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTT 1516 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||| ||| || || || || || || ||||| || || | | || | Sbjct 1069 ACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACC 1128 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || ||||||||||| |||||||| || || || ||||| || | || | |||||||| Sbjct 1129 ATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTT 1188 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| |||||||| || || | | || ||| ||| ||||||| ||| || Sbjct 1189 ATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGAT 1248 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | || ||||| || || ||||| Sbjct 1249 TGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935712776434