Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq244 407 2e-108 seq1825 132 6e-26 seq2024 84.2 3e-11 >seq244 Length=4003 Score = 407 bits (450), Expect = 2e-108 Identities = 1374/2117 (65%), Gaps = 42/2117 (2%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||||||||| || || || ||||| ||| || || || |||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | | | || || || || |||||||| | |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 | || || | || |||||||| | | | || || | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62116 || || | ||| | | || |||| || | || || | || |||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 | ||| ||| | ||||||| ||||| ||||| || | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 || || || || | ||| ||||| |||| | || | ||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 || || ||||| | | | ||||| ||||| ||||||| || || ||||| |||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 62354 || || ||||| | || | || ||| ||||| | ||||| || || ||| || Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACC--ATGTTGAGCAATTTTTTCCTT--GAGCTT 1591 Query 62355 --CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT 62412 |||||| ||| || || | || || ||| | | ||| || Sbjct 1592 AACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTT 1651 Query 62413 ACTGGCGTACGAT--CCTACATATGTATCGTA-TGGTCCTTCCTTCT-CAGCTAGTTCAC 62468 | | | || || ||| || || || | |||| |||| |||| || || | Sbjct 1652 G--GACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTT--TTCTTCAGCCAGCTCGC 1707 Query 62469 AACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCG 62528 || || ||||| ||| ||| ||| || ||||| || || | |||| || | | | Sbjct 1708 AAGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAG 1767 Query 62529 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 62588 |||| | ||| || | | | || | | ||||| | |||||| | |||||||||| Sbjct 1768 CTTCAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACAC 1827 Query 62589 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62648 | | ||||||||| | || | ||| || ||| ||||||||| | ||||||||| | Sbjct 1828 CTAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGT 1887 Query 62649 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 | ||||| || || ||||| | ||||| |||||||| || ||||| | || || Sbjct 1888 TGATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCT 1947 Query 62709 GAAAATCAAATCGCCCA---TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTAC 62765 | || || | | || | | ||||| || ||| |||| || |||| |||| Sbjct 1948 GGAAGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTAC 2007 Query 62766 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62825 | || || || |||| || | |||| | || || || || | |||||||||| Sbjct 2008 AGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACT 2067 Query 62826 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 62885 |||| || || || ||||| || ||||||||| ||||||| ||||||||||| || |||| Sbjct 2068 TGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGA 2127 Query 62886 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 62945 ||||| |||| |||||| | |||| ||| | || || | ||| | | | ||||| | Sbjct 2128 ATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGA 2187 Query 62946 TTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63003 || | | | || |||| ||| |||| || | || ||| | || || || Sbjct 2188 TTGTT--TCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATC 2245 Query 63004 TCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63063 ||||| || | ||||||||| ||||| ||||| | ||| ||||| || || | Sbjct 2246 ACCCCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATT 2305 Query 63064 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGG 63122 || || || | ||| ||||||||||| | ||||||||| ||| || | || | | Sbjct 2306 GTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGAG 2364 Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 |||| ||| || || || |||||| | | ||| | ||| | | |||||||| | Sbjct 2365 CTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGT 2424 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| ||||||||||| || || | | || || || ||||| || |||||||| | | Sbjct 2425 GCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACAT 2484 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302 | | ||| || || || | || | |||||| || | || ||||| || ||| || | Sbjct 2485 AACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAG 2544 Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63362 | || | ||||| ||| |||||||||| || | | ||| || || || | Sbjct 2545 TACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAG 2604 Query 63363 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422 | | ||||| ||| || || |||||| || || ||||| || || ||| ||||| Sbjct 2605 CAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCAT 2664 Query 63423 CCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 63481 || |||| || || || || || ||||||||| ||||| ||| || ||||| || Sbjct 2665 CCTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAA 2723 Query 63482 AAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63541 | |||||| || |||||||| | |||||| | || ||||| |||||||| || Sbjct 2724 AGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCG 2783 Query 63542 GAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63599 | || |||| | ||| |||||| || || || |||||||| | || || || |||| Sbjct 2784 GCATCGATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTC 2841 Query 63600 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63659 ||||| | | ||| || || || | |||||| || || | || || ||||||| Sbjct 2842 TTTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAA 2901 Query 63660 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63719 | | |||||| || || || || || || || | ||||| || || || Sbjct 2902 AGAAATTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGTT 2959 Query 63720 TGTTA--ACTACATCCATGGTAATACTT-GAAATAATAGGAAAATGTTTCCCATTTTTAG 63776 || | || | || |||| || ||| | || ||||| | || || || | |||| Sbjct 2960 TGCCAAGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTAG 3018 Query 63777 GATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGT 63836 | |||| |||||| ||| ||| || | |||| | || | || || ||||| || | Sbjct 3019 GGTTGATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTAT 3078 Query 63837 GTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTAC 63896 ||| || || | || || | ||| || | | || ||||| || || ||||| | Sbjct 3079 GTAAGTTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTGAGTAGTAGT-C 3137 Query 63897 AAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATAT 63955 | || || || | ||||| || || |||| | ||| | ||||| ||||| | ||| Sbjct 3138 ATGTAAGCAGCGGTCTCGGCAGCAAGGTTGTCAAGTTCAATGGTTGTAACACCTTGATAA 3197 Query 63956 ATTCCTTGGATAACCTT 63972 | ||| || ||||| Sbjct 3198 ACGCCTGAAATGACCTT 3214 >seq1825 Length=31147 Score = 132 bits (146), Expect = 6e-26 Identities = 381/585 (65%), Gaps = 6/585 (1%) Strand=Plus/Plus Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 |||||||||||||| || ||||||| | | || | ||| | | | ||| || Sbjct 9281 CATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATCAGC 9340 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 ||| ||||||| | || || | || | | | |||| |||||| ||||| | ||| Sbjct 9341 ACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTA 9400 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | ||| || || || || ||| || | | ||| |||| ||| Sbjct 9401 CATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTCATT 9460 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 | | || | | ||| || | |||||||||||||||||||||||| || | || || Sbjct 9461 AAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTAAGA 9520 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| | |||| || || | ||| | ||| | || || || ||||||||| Sbjct 9521 ACCAGAGCCACGGATCTTTTGGAATGAGACACCGACACCACCAGCAGCTTTAGAGATACG 9580 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || | |||| || |||||||| || || |||||||| || |||| | | || Sbjct 9581 AGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGACAAG 9640 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 |||||||| || | ||| | | || |||||||| || | ||| || | ||| || Sbjct 9641 GAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCATG 9700 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 ||| || |||| || | |||| ||| |||| | || |||| ||| ||| Sbjct 9701 AGTGAAATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATC---TTG 9757 Query 63559 ---ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 ||| || || | || |||||||| | ||||| ||||| | |||||| ||||| Sbjct 9758 ACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTACC 9817 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660 ||| || || || | ||| |||||| || || |||||||| Sbjct 9818 GTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAA 9862 >seq2024 Length=32104 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 63007 CCAAAC--ATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63064 |||||| | |||| || ||||||||||||| ||||||||||| ||||| || || | Sbjct 3702 CCAAACGAACTGTCAAGACCAGGACATTCATTGGGACACATCAAAGACCATTCACCATTT 3643 Query 63065 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||| ||| || |||||||| | || ||||||||||| Sbjct 3642 TCCTCCACACGCTTCATAAATAAATTGGGAATCCAAAG 3605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633609711994400