Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2381 194 2e-44 >seq2381 Length=15399 Score = 194 bits (214), Expect = 2e-44 Identities = 378/552 (68%), Gaps = 20/552 (4%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || || | |||||| || || | || | || || ||| || ||| Sbjct 10907 CAAGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAA 10966 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||||||||| || || || ||||| |||||| || || Sbjct 10967 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAG 11026 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 |||||||| || || ||||| || || | || || |||||| || |||| | Sbjct 11027 ATACCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCG---TTACCAGAG 11083 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| || || |||||||| || || ||| ||||| || | ||||||||||| | | Sbjct 11084 ATCCACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCA 11143 Query 93332 AATAGGTAATCTCGCTCGTCC-GAATCTCGT--ATGTATGTATCGATTAACAGAGAATAC 93388 || | ||||| || || || | || | ||||| || || || |||| | || Sbjct 11144 AACAAC--ATCTC-CTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAG 11200 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 |||| | ||||| ||||| || ||||||||||| || ||||||||| | ||||| | | Sbjct 11201 GTTTCGGCATGGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGG 11260 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 |||| ||||| | | | || | | || | ||||||||||||| |||||| | Sbjct 11261 ATCTTTACTTCATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTG 11320 Query 93509 GCaaaaaaaGCCAATATATGCTTTAT--AAAAT-----GTTTCTCATCATCTTTAAGCTT 93561 ||||| || ||||| | | | || | ||| ||| || |||| || || Sbjct 11321 GCAAAGAAGGCCAAGACACGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTT----GTT 11376 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 ||||||||| | | || || || | || | |||||| |||||||||| || ||||| Sbjct 11377 CTCCCAATCGTGTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTC 11436 Query 93622 TGCTTTTTTGTA 93633 || |||||||| Sbjct 11437 AGCCTTTTTGTA 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556841212421360