Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2078 158 1e-33 seq2232 152 4e-32 seq1425 116 3e-21 >seq2078 Length=27221 Score = 158 bits (174), Expect = 1e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 ||||| |||||| |||| ||||||||||| || || || | || |||||||| | || Sbjct 1530 TTTTACACATTTTTAAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACC 1471 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 |||||||| ||| || | ||| | | || | | || ||||| |||||||||||||| Sbjct 1470 CTTGAAGTTGAATCCTCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAA 1411 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||||||||| |||||||||||| | || || || || || || |||| ||| |||| Sbjct 1410 GGTATTCCACCAGATCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGC 1351 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 | | || || |||||||| || |||||||| || ||||| Sbjct 1350 TCTTTATCAGACTACAACATCCAGAAAGAATCTACACTACAT 1309 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || ||||| |||| || ||||| ||| || | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | |||| ||||| |||||||| || || ||||||||||| || ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| |||||||||||||| ||||| ||| ||| | | || || |||||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || ||||| | || | || | || |||||| Sbjct 1104 ATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTCCGTGGAGGT 1057 >seq2232 Length=20840 Score = 152 bits (168), Expect = 4e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||||||||| ||||| || | || ||||| || ||||| | ||||| ||| Sbjct 975 GTTAACATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAA 916 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || |||| || | || | |||| ||||| || ||||||||||| ||||| || || Sbjct 915 TCCTCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCA 856 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || |||||||||||||| ||||| || ||||| ||||| ||| ||| | | || || Sbjct 855 GACCAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGAC 796 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||||||||| ||| | || || ||| | || | || || ||| Sbjct 795 TACAATATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGT 742 Score = 145 bits (160), Expect = 6e-30 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||| | || || || || | ||| | ||||| ||| || || Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || ||||| ||||| ||| ||| | | || || ||||| Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| ||| | || || ||| | || | || || ||| Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGT 286 Score = 105 bits (116), Expect = 6e-18 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || ||||| |||| | || || ||| | | Sbjct 741 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCT 682 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || ||||| || ||||||||||| || || || || || ||| Sbjct 681 GATTCTATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACCAA 622 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||||| || || ||| | |||| || |||||| Sbjct 621 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACAAC 562 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 561 ATCCAGAAGGAGTCCAC 545 >seq1425 Length=32788 Score = 116 bits (128), Expect = 3e-21 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||||| |||||||||||||| |||||||| || || ||| Sbjct 31349 GACACCATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 31290 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || || || ||| || | | || || |||||| Sbjct 31289 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGACTACAAC 31230 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | || || ||| | || | || || ||| Sbjct 31229 ATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGT 31182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713605165910