Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq137 174 3e-38 seq2381 145 2e-29 seq2444 125 1e-23 seq205 86.0 1e-11 >seq137 Length=45107 Score = 174 bits (192), Expect = 3e-38 Identities = 667/1034 (65%), Gaps = 29/1034 (3%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || || || || ||| |||| || ||||| || || ||||||| |||||||| | ||| Sbjct 42647 GGCGAAGAGCTCTGTAACTGCGAATTCTCACTTGCCTATGGTGCCAAGATTCTCTTGAAC 42588 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||||| | ||| |||||| || ||||||||| ||| | ||||| Sbjct 42587 CGTACCCATTTACGTCTCATGCGTGGTCGTCGTTATGGTCTCTGTGGTGCAAATGGCTGT 42528 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| ||| | ||||| |||||||| || | ||| | || || || ||| Sbjct 42527 GGTAAGTCCACCTTGATGCGTGCCATTGCCAATGAACAGGTAGAGGGTTTCCCTCCTCGT 42468 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACT 279584 |||| | | ||| || |||||||| |||||||| || || | |||| | | Sbjct 42467 TCTGTCCTCAAGACGGTCTATGTAGAACACGACATTGATGGTTCAGAAGCAGATACCGGT 42408 Query 279585 GTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCA-GCTCTCCTGAGGAAAT 279643 || |||| ||| | | || | |||| || | ||| | || | ||||| | Sbjct 42407 CTGGTCGATTTCATCA--TCAGCTCCGAAGGTGTTGAATGTCAAGATCGAC--AGGAAGT 42352 Query 279644 CATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATG---CGTAATCTGCCAGTAGG 279700 | | | || | |||| ||| |||| |||| | | ||| | | | || Sbjct 42351 CGCTCGTATCTTGAAAAATTATGGCTTTACTGAAGAAATGGTGCATCATCAGGCTATTGG 42292 Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGC 279760 |||||| |||||||| ||||| |||||||| ||| | |||| ||||| | || ||| Sbjct 42291 TTCTCTCTCGGGTGGCTGGAAAATGAAGCTTGCCTTGGCTCGTGCCATGTTGATGAATGC 42232 Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 |||| | || ||| | || || || || ||||| |||| ||| || |||||||| Sbjct 42231 CGATATTCTCCTGTTGGACGAACCTACTAACCATCTGGATGTGGTCAATGTGGCCTGGCT 42172 Query 279821 AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGG 279880 || | ||| || |||| |||| || |||| |||||||||| ||||||||||| Sbjct 42171 AGAGAACTATCTGTTGGGTCTCAAGACCGTGACTTCGATCATTGTCTCACACGACTCTGG 42112 Query 279881 CTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAA 279940 || | ||| ||||| ||| || || || |||||| || ||||| || Sbjct 42111 ATTTTTGGATCATGTGTGTACTGATATTATCCATTATGAGGGTAACTATAAGCTG---AA 42055 Query 279941 GCAC-ATCG--GCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTA 279997 || |||| | || ||||| | || || ||| ||| || || |||||||| Sbjct 42054 GCGTTATCGCGGTAATCTGTCGGAATTTGTCAAGAAGGTGCCTCGTGCAGCTGCCTACTA 41995 Query 279998 TGACCTGAAGGACGCCACCGCCAAGTGGGA----ATTCCCTGAGCCAGGGTTTCTGGAGG 280053 | ||| ||| || | | | || |||||| || || || | ||| |||| Sbjct 41994 TTCACTG--GGAG--CAGCTCAGACTGTCTTTCGATTCCCCGAACCTGGCTATCTTGAGG 41939 Query 280054 GCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCT-TATCCC 280112 |||||| | ||||| || || ||| ||||| | || | ||| | ||||| Sbjct 41938 GCATCAAGACCAAGGAACGTGCTATCCTGAAGATGAAGAATGT-TGATTTCCAATATCCT 41880 Query 280113 AATGGCCCCAA----CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGAT 280168 | |||| || || | | | || | || ||| || || || | Sbjct 41879 GGTACTGCCAAGAAGCAACTGAACGA-TATCTCATTCCAATGTTCGTTGGCATCTCGTGT 41821 Query 280169 TGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGA 280228 | |||||| || ||||| ||||| |||||| ||| || || || | |||| ||||| Sbjct 41820 CGCTGTCATCGGTCCCAACGGTGCCGGTAAGAGTACACTGATAAAGCTGTTGACGGGCGA 41761 Query 280229 GACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 | | || | ||| | || ||||||||||||||| |||| || || || || || Sbjct 41760 GCTTGAATCCGAAGTGGGTACTGTATGGAAGCATCCCAACTTGCGTATTGCCTATGTAGC 41701 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||| || || || |||||||| |||||||||| | |||||||| Sbjct 41700 CCAGCACGCCTTCCACCATATTGAAAAACACCTGGATTCGACTCCTAACGAGTACATTCA 41641 Query 280349 GTGGCGCTATGCAA 280362 ||||| ||||||| Sbjct 41640 ATGGCGTTATGCAA 41627 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || || || ||||||||| | |||| |||| |||||| ||||||||||| || || ||| Sbjct 41300 GGACTTGAGCCCGAGTTTGCTTCTCATTCTCACATTCGTGGTCTTTCTGGTGGTCAAAAG 41241 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | || || || |||||| ||||| | | || ||| || | || | || || Sbjct 41240 GTCAAGTTGGTTATTGGTGCAGCTATGTGGAACAAACCACACATGCTTGTCTTGGATGAA 41181 Query 280800 CCTACCAACTATCTGGACCGCGA 280822 ||||| |||||||| || || || Sbjct 41180 CCTACTAACTATCTTGATCGTGA 41158 >seq2381 Length=15399 Score = 145 bits (160), Expect = 2e-29 Identities = 369/554 (67%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | |||||| || ||||| ||||| || ||||| || | |||||| Sbjct 10601 TTCATGACACCAGCACGTTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCT 10660 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | ||||| || | |||||||| || |||||||| ||||||||||| ||| | | Sbjct 10661 TGAAGAGAAATCATGTCCATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAG 10720 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 ||||| || || | | || || || || || || | || || | ||| || | || | Sbjct 10721 CCAAGGGCAACCATCAAACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCG 10780 Query 251704 TTCATGCCAATC-ATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||| |||||| | ||| ||| | || ||| | |||||| | ||| | |||| Sbjct 10781 TTCATACCAATCAAGTTGAC-AGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAAC 10839 Query 251763 TGCCTCCTCCACAAT--TGC-CTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGA 251819 | |||| ||||| ||| ||| | || | ||| | | |||| || | | Sbjct 10840 AG---CCTCAACAATGATGCTCTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGT 10896 Query 251820 GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879 | ||| ||| |||| | ||| ||||| || || |||| ||| | ||||| || Sbjct 10897 GAACAAGAGACAAGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGA 10956 Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCC 251939 | | || |||||||| | ||||| ||| ||||||||||||| | | ||| || || Sbjct 10957 GAAAGTCAAACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACC 11016 Query 251940 AGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTC 251999 |||||| | | ||| |||||| | | ||||| | ||||||||||| || | || Sbjct 11017 AGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTT 11076 Query 252000 CTGCGACAAGAACTTCTGTGCCCATGCTGCCTT---CTT--TCCAACCGCGGGGATTGTT 252054 || | |||| |||||| ||||||| ||| | || ||| || ||| Sbjct 11077 ACCAGAGATCCACTTGAATGCCCAATCTGCCTTACGCTTGATACA-----GGGAATGGTT 11131 Query 252055 TCGATTGCATCAAA 252068 ||||| |||||||| Sbjct 11132 TCGATAGCATCAAA 11145 >seq2444 Length=14139 Score = 125 bits (138), Expect = 1e-23 Identities = 392/600 (65%), Gaps = 17/600 (3%) Strand=Plus/Minus Query 279328 AGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTG 279387 ||||| ||| ||| |||||| || || ||| ||||||| ||||| || || || |||| Sbjct 951 AGAAGAAGA-TGATGAAGGTGAAGACCTCTGTAACTGTGAGTTCTCTCTTGCTTACGGTG 893 Query 279388 GGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCA 279447 ||||| || | ||| || ||| | |||||||| || || |||||| Sbjct 892 CTAAGATCTTGTTGAACAGAACTGCTCTCCGTCTTAAGCGTGGTCGTCGTTACGGTCTCT 833 Query 279448 TCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGG 279507 ||| |||| || |||||| |||||| ||||| |||||||| |||| || | | Sbjct 832 GTGGTGCCAACGGTTGTGGTAAGTCCACTCTTATGCGTGCCATTGCCAACGAACAAGTTG 773 Query 279508 AAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCT 279567 |||| || ||| || || | | ||| || || || || ||||| ||||| | Sbjct 772 AAGGTTTCCCTCCTCGTTCCGAACTTAAGACTGTCTACGTCGAACACGATATCGATGGTT 713 Query 279568 CTCTCTCGGATAG-CACTGTGTTCGACTTC---CTAACGTCTGACAATCAGGTTATGGAA 279623 | | |||| | | |||| |||||| || | || || |||| || || Sbjct 712 CCGAAGCCGATACTCCCCTTGTT-GACTTCATCCTTGCTTCCGA-----AGGTGTTGAAA 659 Query 279624 ATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATG 279683 || | || || || || ||| || || | ||||||| |||| ||| Sbjct 658 CCAAGGACCCC-GAACAAGTCCGTAAGATCCTTTTGGACTATGGTTTCTCTGAAGCTATG 600 Query 279684 CGTAATC----TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCAC 279739 || | | || | | ||| || || |||||||||||||||||||| || || | Sbjct 599 -GTCACCAAAATGGCTATTGGTGAACTTTCTGGTGGTTGGAAGATGAAGCTCGCTCTTGC 541 Query 279740 TCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799 ||| || || | || ||| ||| | || ||||||| || || || |||||| |||| Sbjct 540 TCGTGCTATGTTGATGAATGCTGATATTCTCTTGCTTGACGAACCTACTAACCACTTGGA 481 Query 279800 CACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCT 279859 ||||| |||||| | | |||||| |||| |||| |||| | ||| | Sbjct 480 TGTTGTTAACGTTGCCTGGTTGGAAAACTACCTCTTGGGTCTTAAGACTGTTACCTCCAT 421 Query 279860 CATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 |||||| || ||||||||||| ||| | ||| ||| || || | |||||||||||| || Sbjct 420 CATTGTTTCYCACGACTCTGGTTTCTTGGATCACGTCTGTTCCGACATCATTCACTACGA 361 >seq205 Length=4540 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625 ||||| |||||| || || |||||| ||||||| || |||||| || |||||| Sbjct 3625 CGTTCGATTCCCTCTGTCGTCGATGGCTTCAAGCCTGGTCAACGTAAGGTCTTCTTTGGT 3684 Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685 | ||||||| | | | ||||| ||||| |||||||| || || || | Sbjct 3685 TCCATCAAGCGTGGCAAGAATTCTGAAATCAAGGTGGCTCAGTTGGCTAACTACGTCGCT 3744 Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA---TG 218742 | || || |||||||||||||| ||| || | ||| | ||| || || Sbjct 3745 GGTATCACTCAGTACCATCACGGTGAAGCCAGTGTG---GCTGCGACTGTGATCAACATG 3801 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || || |||| ||| |||||||||||||| |||||||| | ||| ||||| || ||| Sbjct 3802 GCTCAAGACTTTGTCGGCAGTAACAACATCAACTTGCTTGTTCCCTCAGGTCAATTCGGT 3861 Query 218803 TCTCGTC 218809 | |||| Sbjct 3862 ACCCGTC 3868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027799741986574