Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2232 181 2e-40 seq2120 178 2e-39 seq137 159 6e-34 seq2078 158 2e-33 seq1425 127 4e-24 seq2444 118 2e-21 >seq2232 Length=20840 Score = 181 bits (200), Expect = 2e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || |||||||| || |||||||| || || ||| Sbjct 515 CCACCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 574 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | || ||||| |||||||| || ||||| ||||| | ||||||||| || || Sbjct 575 AGAGAACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGR 634 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||||| ||| || ||||| | || | |||||| || Sbjct 635 ATGCCTTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACC 694 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| || || || |||||||| || || ||||| Sbjct 695 TCTAAGGTGATGGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 741 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || ||||||||||| || || || || Sbjct 743 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAA 802 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | ||||||||||| || || || || || || || | ||||||||| || || Sbjct 803 AGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGG 862 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| |||||| ||||||| ||| |||| ||| | ||||| ||| Sbjct 863 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACT 922 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || ||||||||||| ||||| || ||||| Sbjct 923 TCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 Score = 167 bits (184), Expect = 4e-36 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || ||||| || | |||||||| || || || ||||||||||| || | Sbjct 279 TTTATTGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGT 338 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || | | ||||||||||| || || || || || || || | |||||||| Sbjct 339 AGTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGT 398 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || || |||||||||||||| |||||| ||||||| ||| |||| ||| | | Sbjct 399 CTGGGGGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGG 458 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || || || || || ||||| || || |||||||| Sbjct 459 ATTCGACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 >seq2120 Length=25072 Score = 178 bits (196), Expect = 2e-39 Identities = 332/487 (68%), Gaps = 8/487 (2%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||||| |||| ||||| || || ||||| |||||||| ||||| || Sbjct 11655 TGAAGCATGAGCCACATACCTTCAACATAATCACGGGCATGACCCCAATCACGCTTGGCA 11596 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGT----GCAAGACC 268362 || ||||| || ||| | || || | |||| ||| | | | | |||| | | Sbjct 11595 TCAATGTTACCAAGGTAGAGACAGT----CTTGACGACCCAAATGAATATCAGCAACAGC 11540 Query 268363 GCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 ||||| || || || || ||||| || ||||| |||| |||||||||||||| Sbjct 11539 ACGAGTAATCTTACGTGTGACGAAAGTACGACCACGACGAGGAGATTCGTGGTTGAAGAG 11480 Query 268423 GATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482 ||| ||||| || || ||||| |||| | ||||||||||| || || ||||||| | Sbjct 11479 GATACCGTTACAGGCATACATGTCATAGGATTCACGGTAGTTGACTACAATCCAGTAACC 11420 Query 268483 AAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGG 268542 | | | ||| ||||| | || |||||||| || | || || || || ||||||||| Sbjct 11419 ATAGAGCTTGGCAACACCATAGGGAGAACGAGGGTAAAATGGTGTGGTTTCCTTTTGAGG 11360 Query 268543 GATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTT 268602 | |||| || || || |||| || ||||| || ||||||||||| | Sbjct 11359 GGTTTCGACAACCTTACCGTAGAGTTCAGAGGTAGAAGCTTGGTAGAAACGAACACGGTC 11300 Query 268603 TTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTC 268662 | ||||| || | ||||| || || | | ||||||||| || | | |||| || || Sbjct 11299 AGCAAGACCACAAGTACGGATGGCATCCAAGAGACGAAGAGTACCAAGGGCATCAACATC 11240 Query 268663 CGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATA 268722 | || || || | ||| ||||| || |||| ||| || || || ||| ||| || Sbjct 11239 ACCAGTGTATTCAGACATATCGAAAGAAACCTTGACGTGAGATTGAGCAGCCAAGTTGTA 11180 Query 268723 AACCTCA 268729 || ||| Sbjct 11179 TACTTCA 11173 >seq137 Length=45107 Score = 159 bits (176), Expect = 6e-34 Identities = 452/686 (66%), Gaps = 39/686 (6%) Strand=Plus/Plus Query 224975 GCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGG 225034 ||||| ||||| || ||||||| ||| || ||| |||||||| || |||||||||||| Sbjct 41629 GCATAACGCCATTGAATGTACTCGTTAGGAGTCGAATCCAGGTGTTTTTCAATATGGTGG 41688 Query 225035 AAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGA 225094 || || ||||||||||| || || || |||| ||||||||||||||| |||| ||| Sbjct 41689 AAGGCGTGCTGGGCTACATAGGCAATACGCAAGTTGGGATGCTTCCATACAG-TACCCAC 41747 Query 225095 GTCGG-TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 |||| || |||||| || | | ||| || || ||| |||| || ||||| ||||| Sbjct 41748 TTCGGATTCAAGCTCGCCCGTCAACAGCTTTATCAGTGTACTCTTACCGGCACCGTTGGG 41807 Query 225154 GCCAATCACGCCAATCCGGGATG-------ACATTGCAACCTGCGA----GTTCACGTTG 225202 || || || | | || |||| |||||| || || || ||||| |||| Sbjct 41808 ACCGATGACAGCGACACGAGATGCCAACGAACATTGGAA--TGAGATATCGTTCA-GTTG 41864 Query 225203 CTGAAGATCT---CAGGGCCAG---TTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATG 225256 || ||| ||| |||| |||| || ||| || | || ||||| | Sbjct 41865 CT-----TCTTGGCAGTACCAGGATATTGGAAATCAA----CATTC--TTCATCTTCAGG 41913 Query 225257 ATGGCACGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG 225316 || ||||| ||||||| | || ||||| || | || || |||||||| | Sbjct 41914 ATAGCACGTTCCTTGGTCTTGATGCCCTCAAGATAGCCAGGTTCGGGGAATCGAAAGACA 41973 Query 225317 GTCACCGCGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCA 225376 ||| || | ||| ||||| | || || || ||| || || | Sbjct 41974 GTCTGAGCTGCTCCCAGTGAATAGTAGGCAGCTGCACGAGGCACCTTCTTGACAAATTCC 42033 Query 225377 GACAGGTTTCCGAGGT---GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCC 225433 ||||| || ||| | | ||||| ||||| ||| ||| ||||| | ||| | Sbjct 42034 GACAGATTACCGCGATAACGCTTC---AGCTTATAGTTACCCTCATAATGGATAATATCA 42090 Query 225434 GAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTC 225493 | ||||| || | || ||||||||||| || |||||||| || | |||| || | Sbjct 42091 GTACACACATGATCCAAAAATCCAGAGTCGTGTGAGACAATGATCGAAGTCACGGTCTTG 42150 Query 225494 AGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGT 225553 || ||| || | | ||||| ||||| ||| || |||| ||||| |||||| Sbjct 42151 AGACCCAACAGATAGTTCTCTAGCCAGGCCACATTGACCACATCCAGATGGTTAGTAGGT 42210 Query 225554 TCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATT 225613 ||||||| || || || || |||| || | ||||| || | | | ||||||||| Sbjct 42211 TCGTCCAACAGGAGAATATCGGCATTCATCAACATGGCACGAGCCAAGGCAAGCTTCATT 42270 Query 225614 TTCCAGCCCCCGGACAGGGAGCCGAT 225639 |||||||| || || || || || || Sbjct 42271 TTCCAGCCACCCGAGAGAGAACCAAT 42296 Score = 89.7 bits (98), Expect = 9e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225773 TCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGC 225832 ||||||||||| || || || |||||| ||| |||| | ||||| ||||| | | Sbjct 42430 TCAATGTCGTGTTCTACATAGACCGTCTTGAGGACAGAACGAGGAGGGAAACCCTCTACC 42489 Query 225833 TGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGG 225892 || |||| ||||| ||||| | || ||| ||| || ||| || | ||| ||| Sbjct 42490 TGTTCATTGGCAATGGCACGCATCAAGGTGGACTTACCACAGCCATTTGCACCACAGAGA 42549 Query 225893 CCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCA 225952 || ||| || || ||| ||| | | || ||||| ||| |||||| ||||| Sbjct 42550 CCATAACGACGACCACGCATGAGACGTAAATGGGTACGGTTCAAGAGAATCTTGGCACCA 42609 Query 225953 TAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 |||||||| ||||| ||||| | || || || || ||||| || Sbjct 42610 TAGGCAAGTGAGAATTCGCAGTTACAGAGCTCTTCGCCCTCTTC 42653 >seq2078 Length=27221 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| || | |||| ||||| || || ||||| |||||||| || || || Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | | | |||||||||| ||||| || ||||| || | | |||||| || |||||| Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||||||| ||| ||| || || | || | ||||| ||| Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACT 1465 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || ||||||||||||||||| || ||||| Sbjct 1466 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||||| || || ||||| |||||||| || || || Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1117 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | ||||||||||| || || ||||| || || || | |||||||| |||||| Sbjct 1118 AGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGA 1177 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||||||| ||||||| || || | || | ||||| ||| Sbjct 1178 ATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACT 1237 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 1238 TCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 >seq1425 Length=32788 Score = 127 bits (140), Expect = 4e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || || ||||||||||| || || || Sbjct 31183 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGAA 31242 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | |||||||| || ||||| || || || || || | ||||||||| || ||| Sbjct 31243 AGAGAACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 31302 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || ||||||||||||||||||||| |||||| || |||||||| Sbjct 31303 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTC 31349 >seq2444 Length=14139 Score = 118 bits (130), Expect = 2e-21 Identities = 256/384 (67%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 225247 CAGCTTCATGATGGCACGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAA 225306 || ||||| ||| ||||| ||||||| ||||||| || ||||||||||| |||||||| Sbjct 192 CATCTTCAAGATAGCACGTTCCTTGGTCTTAATACCTTCGAGGAACCCGGGTTCGGGGAA 251 Query 225307 CTCCCACTTGGTCACCGCGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGC 225366 || | | | | | | || ||||||||| ||||| || ||| Sbjct 252 CTTGAAGGAGATTTGAGAAGCTTCAAGAGAGTAGTAAGAAGCAGCACGAGGAACCTTCTT 311 Query 225367 CACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAAC 225426 ||||| | || ||||| || || | |||||||| ||| ||||| |||| Sbjct 312 GACGAATTCGGAAAGGTTACCCTTGTAACGCTTGAGCTTGTAGTTGGGTTCGTAGTGAAT 371 Query 225427 AATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACAC 225486 || | || || || || | ||| ||||||||||| || ||||||||||| | || Sbjct 372 GATGTCGGAACAGACGTGATCCAAGAAACCAGAGTCGTGRGAAACAATGATGGAGGTAAC 431 Query 225487 GTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTT 225546 || | || ||| ||||| | | ||| || ||||| || |||| |||||| Sbjct 432 AGTCTTAAGACCCAAGAGGTAGTTTTCCAACCAGGCAACGTTAACAACATCCAAGTGGTT 491 Query 225547 TGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAG 225606 ||||||||||| || | || || ||||||| || | || || || | |||| || Sbjct 492 AGTAGGTTCGTCAAGCAAGAGAATATCAGCATTCATCAACATAGCACGAGCAAGAGCGAG 551 Query 225607 CTTCATTTTCCAGCCCCCGGACAG 225630 |||||| ||||| || || || || Sbjct 552 CTTCATCTTCCAACCACCAGAAAG 575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589981932080