Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2381 138 2e-27 >seq2381 Length=15399 Score = 138 bits (152), Expect = 2e-27 Identities = 358/538 (67%), Gaps = 12/538 (2%) Strand=Plus/Minus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 |||| | || || || || || ||||| |||||| ||||| || ||||| |||| | Sbjct 11147 TGTTTGATGCTATCGAAACCATTCCCTGTATCAAGCGTAAGGCAGATTGGGCATTCAAGT 11088 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||| || |||| | || | ||| | |||| |||||| | || ||||| | Sbjct 11087 GGATCTCTGGTAACGACTCT---TTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAAG 11031 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788 | ||||||||||| || | || ||||| ||||||||||||||| || ||| || ||| Sbjct 11030 GTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTC-ATG 10972 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 || || | || ||||| |||||||| ||| | | || || || || || | |||||| Sbjct 10971 CCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTT 10912 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCC 42908 || || ||| ||||| | ||||||| | | | || || || || || | | Sbjct 10911 GCTTGTCTCTTGTTC---ACTCACCTCAAGAAGATTCCTTCTGCCGAACGTATCAAGAGC 10855 Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC 42968 ||||| ||||| || | || || | || ||| | || | | | || || | Sbjct 10854 ATCATTGTTGAGGCTGTTGGTATTGAACAAGAATTCTTGACTGATGCTTTACCTGTCAAC 10795 Query 42969 CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTC 43028 || | || |||||| | || |||||| | ||||| | | ||||||||| | | | Sbjct 10794 TTGATTGGTATGAACGCTAAGCTTATGTGCCAATACATTGAATTCGTCGCCGATCGTTTG 10735 Query 43029 CTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGG 43086 || |||| ||| | | | | ||||||| | | |||||| || || |||| Sbjct 10734 ATGGTTGCC-CTTGGCTTTGATAAG-ATCTACAATGCCACTAACCCCTTTGATTTCATGG 10677 Query 43087 AGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 | | || || | | |||||||||||||| || |||||||| || | |||||||| Sbjct 10676 ACATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTGTTTCTGACTACCA 10619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305982868640