Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2078 100 2e-16 >seq2078 Length=27221 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || ||||||||||| || || || ||||| |||||||| |||| Sbjct 1057 ACCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGA 1116 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || || ||||| ||||||||||| || || ||||| || || || Sbjct 1117 TAGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGG 1176 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||||| || ||| |||||||| | | | | ||||| |||||| Sbjct 1177 AATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGAC 1236 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || |||||||| || || ||||| ||||||||||||||||| Sbjct 1237 TTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397048782496828