Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2078 138 3e-27 seq2232 134 3e-26 seq2204 134 3e-26 >seq2078 Length=27221 Score = 138 bits (152), Expect = 3e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || ||||| | || |||||| ||||| || ||||| | Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1117 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | ||| || |||||||||||||| || || || || ||||||||||| ||| Sbjct 1118 AGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGA 1177 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| || || ||| || || |||||||| |||||||| ||||| || Sbjct 1178 ATACCTTCTTTATCTTGAATCTTTTGC-TTGACGTTTTCAATAGAATCAGAGGATTCGAC 1236 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| || || || || || ||||| || || || ||||| Sbjct 1237 TTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | || |||||| ||||| || ||||| | Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | ||| || ||||||| ||| ||||||||||| |||| ||| |||||| ||| Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || || || ||| || || |||||||| || ||||| ||||| || Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTGC-TTAACGTTTTCAATTGAATCAGAGGATTCAAC 1464 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || || || ||||||||||| || ||||| Sbjct 1465 TTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 >seq2232 Length=20840 Score = 134 bits (148), Expect = 3e-26 Identities = 172/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | ||| || | |||| || ||||||||||||||| ||||| Sbjct 284 TGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCA 343 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || | || || |||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 344 GAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTG---GTCT 400 Query 288364 GGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| || ||||| || || ||||| ||| || || ||||| || || || ||| || Sbjct 401 GGGGGRATACCTTCCTTGTCTTGGATCTTTTGC-TTGACGTTCTCAATGGAGTCGGAGGA 459 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | || || ||||| || || |||||||| || || |||||||| Sbjct 460 TTCGACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 131 bits (144), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || ||||||||||||||| ||||| | Sbjct 743 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAA 802 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || | || || |||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 803 AGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTG---GTCTGGG 859 Query 288364 GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || || ||||| ||| || || ||||| || || || ||| ||||| Sbjct 860 GGGATACCTTCCTTGTCTTGGATCTTTTGC-TTGACGTTCTCAATGGAGTCGGAGGATTC 918 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 919 GACTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 Score = 114 bits (126), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| ||| || || ||||| || ||||| | | Sbjct 515 CCACCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 574 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || | || |||||||| || || || || ||||| || ||||| ||||| ||||| Sbjct 575 AGAGAACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGG---TCTGGA 631 Query 288366 --GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || || ||||| ||| ||||| || ||||| |||||||| ||||| Sbjct 632 GGRATGCCTTCCTTGTCTTGGATCTTTTGCTTT-ACATTTTCGATAGAATCAGATGATTC 690 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || || || ||||||||||| || || ||||| Sbjct 691 AACCTCTAAGGTGATGGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 741 >seq2204 Length=21180 Score = 134 bits (148), Expect = 3e-26 Identities = 260/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| ||| | || || ||||| ||||| || |||| ||||| | ||||| || Sbjct 6317 CAAGCTTCTACTTCTGAATTGTACGGAAAGGTTGTCGAAACGCCTCAAAAGGAAACCACG 6376 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || || ||||| || || |||||||||||| | || | ||||||||| | Sbjct 6377 CCTTTCTACCCTCGTTCACCCTATGGTGTTGCAAAGCTTTATGGCTATTGGATCGTTGTC 6436 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 ||||||||||| || ||| | |||||| |||||| ||| || ||||| || | Sbjct 6437 AATTACCGTGAATCTTATGAGATGTATACATGCAATGGCATTCTCTTTAATCATGAATCT 6496 Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656 || | |||| | || || || ||||| || || || | || || ||| ||| Sbjct 6497 CCTCGTCGTGGCCGTACCTTTGTCACACGTAAGATTACAAATGCTGTTGCTGATA--TTC 6554 Query 72657 AATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 | | | | || || |||| ||||| | || ||||| || ||||| | |||||||| Sbjct 6555 ATTTGGGACGTCAAGAATGTTTGTATTTGGGCAATATTGACGCCAAGCGTGATTGGGGTC 6614 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 |||| ||||| | |||| ||||||| | ||||| |||||||| | || || |||| Sbjct 6615 ATGCTCGAGATTATATCGAAGGAATGTGGCTTATGCTTCAACAAGAGAAGCCTGACGACT 6674 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 ||| | || || || |||| Sbjct 6675 TTGTCTTAGCCACGGGAGAAAC 6696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179611868297892