Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2444 143 6e-29 seq2204 134 3e-26 seq137 122 2e-22 >seq2444 Length=14139 Score = 143 bits (158), Expect = 6e-29 Identities = 491/756 (65%), Gaps = 27/756 (4%) Strand=Plus/Plus Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 333670 ||||| ||| ||||| ||||| | | ||||| |||||||||||||| ||||||||||| Sbjct 195 CTTCAAGATAGCACGTTCCTTGGTCTTAATACCTTCGAGGAACCCGGGTTCGGGGAACTT 254 Query 333671 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCAC 333730 | | | | | | | ||| | ||||||| || | ||| |||||| || Sbjct 255 GAAGGAGATTTGAGAAGCTTCAAGAGAGTAGTAAGAAGCAGCACGAGGAACCTTCTTGAC 314 Query 333731 GAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAAT 333790 ||| ||||| || || |||||||| ||| ||||| ||| |||||||| || || || Sbjct 315 GAATTCGGAAAGGTTACCCTTGTAACGCTTGAGCTTGTAGTTGGGTTCGTAGTGAATGAT 374 Query 333791 AGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTC 333850 || || || || | ||| || |||||||| || ||||| | | | | ||| Sbjct 375 GTCGGAACAGACGTGATCCAAGAAACCAGAGTCGTGRGAAACAATGATGGAGGTAACAGT 434 Query 333851 CTTAAGGTTGATCAGGTA----TTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGT 333906 |||||| | ||||| | ||| ||| || |||||| ||| | |||| Sbjct 435 CTTAAGACCCAAGAGGTAGTTTTCCAACCAGGCA----ACGTTAACAACATCCAAGTGGT 490 Query 333907 TGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 333966 | || || |||||||| | || | | || |||| | ||| ||||| |||||||||| Sbjct 491 TAGTAGGTTCGTCAAGCAAGAGAATATCAGCATTCATCAACATAGCACGAGCAAGAGCGA 550 Query 333967 GTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATA---T 334023 | ||||| ||||| || || ||||| ||| | || |||| | | ||| | Sbjct 551 GCTTCATCTTCCAACCACCAGAAAGTTCACCAAT--AGCCATTTTGGTG-ACCATAGCTT 607 Query 334024 CAAAGCCAACCGATTCTAGA--GTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTT 334081 || || | | | || | | | ||||| ||| | | | || || |||| Sbjct 608 CAGAGAAACCATAGTCCAAAAGGATCTTACGGACTTGTTCGGGGTCC--TTGGTTTCAAC 665 Query 334082 TACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAG 334141 ||| | || | |||||||||| | | | | | ||||| || |||| Sbjct 666 ACCTTCGGAAGCAAGG---ATGAAGTCAACAAGGGGAGTATCGGCTTCGGAACCATCGAT 722 Query 334142 ATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCA-GAG--GGGAACCCTTCAAGCTG 334198 ||||||||| ||||| |||| || || || | | ||| ||||| ||||||| || Sbjct 723 ATCGTGTTCGACGTAGACAGTCTT---AAGTTCGGAACGAGGAGGGAAACCTTCAACTTG 779 Query 334199 ACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACC 334258 |||| |||| || ||||| ||||| || ||||| ||||| | ||||| ||||| Sbjct 780 TTCGTTGGCAATGGCACGCATAAGAGTGGACTTACCACAACCGTTGGCACCACAGAGACC 839 Query 334259 GTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATA 334318 ||| || |||||||| ||| || || |||||| | || || |||| || Sbjct 840 GTAACGACGACCACGCTTAAGACGGAGAGCAGTTCTGTTCAACAAGATCTTAGCACCGTA 899 Query 334319 TGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || ||||| || ||||| | ||| || || ||||| Sbjct 900 AGCAAGAGAGAACTCACAGTTACAGAGGTCTTCACC 935 >seq2204 Length=21180 Score = 134 bits (148), Expect = 3e-26 Identities = 260/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| ||| | || || ||||| ||||| || |||| ||||| | ||||| || Sbjct 6317 CAAGCTTCTACTTCTGAATTGTACGGAAAGGTTGTCGAAACGCCTCAAAAGGAAACCACG 6376 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || || || ||||| || || |||||||||||| | || | ||||||||| | Sbjct 6377 CCTTTCTACCCTCGTTCACCCTATGGTGTTGCAAAGCTTTATGGCTATTGGATCGTTGTC 6436 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 ||||||||||| || ||| | |||||| |||||| ||| || ||||| || | Sbjct 6437 AATTACCGTGAATCTTATGAGATGTATACATGCAATGGCATTCTCTTTAATCATGAATCT 6496 Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645 || | |||| | || || || ||||| || || || | || || ||| ||| Sbjct 6497 CCTCGTCGTGGCCGTACCTTTGTCACACGTAAGATTACAAATGCTGTTGCTGATA--TTC 6554 Query 68646 AATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 68703 | | | | || || |||| ||||| | || ||||| || ||||| | |||||||| Sbjct 6555 ATTTGGGACGTCAAGAATGTTTGTATTTGGGCAATATTGACGCCAAGCGTGATTGGGGTC 6614 Query 68704 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 68763 |||| ||||| | |||| ||||||| | ||||| |||||||| | || || |||| Sbjct 6615 ATGCTCGAGATTATATCGAAGGAATGTGGCTTATGCTTCAACAAGAGAAGCCTGACGACT 6674 Query 68764 ATGTGATTGCAACAGGGAAAAC 68785 ||| | || || || |||| Sbjct 6675 TTGTCTTAGCCACGGGAGAAAC 6696 >seq137 Length=45107 Score = 122 bits (134), Expect = 2e-22 Identities = 442/682 (65%), Gaps = 16/682 (2%) Strand=Plus/Plus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 ||||||||||| |||||||||||||| || |||| ||| || ||| || || || | Sbjct 41616 GTCTTCACCGGTTGCATAACGCCATTGAATGTACTCGTTAGGAGTCGAATCCAGGTGTTT 41675 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 || || |||||||| || ||||| || || || |||| ||||| || ||||||||||| Sbjct 41676 TTCAATATGGTGGAAGGCGTGCTGGGCTACATAGGCAATACGCAAGTTGGGATGCTTCCA 41735 Query 333440 AACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCC 333499 ||| | || || ||| | | ||||| | || ||| || || || || || || Sbjct 41736 TACAGTACCCACTTCGGATTCAAGCTCGCCCGTCAACAGCTTTATCAGTGTACTCTTACC 41795 Query 333500 CGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT----TCA 333555 ||||| || || | ||| | | | || || ||| || | || || | Sbjct 41796 GGCACCGTTGGGACCGATGACAGCGACACGAGATGCCAACGA-ACATTGGAATGAGATAT 41854 Query 333556 CGTTGTCAAAGATTAGTTTTT--CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT 333613 ||| ||| || || || | ||||| ||||| | ||| | ||| | ||| Sbjct 41855 CGT--TCA---GTTGCTTCTTGGCAGTACCAGGATATTGGAAATCAACATTCTTCATCTT 41909 Query 333614 CATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCA 333673 || ||| ||||| ||||| | |||| ||||| || | || || |||||||| | Sbjct 41910 CAGGATAGCACGTTCCTTGGTCTTGATGCCCTCAAGATAGCCAGGTTCGGGGAATCGAAA 41969 Query 333674 CGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTG-ATTCGGGACGCTTCTTCACGA 333732 |||| | | || | ||||| |||| | || || |||||| || | Sbjct 41970 GACAGTCTGAGCTGCTCCCAGTGAATAGTAGGCAGCTGCACGAGGCAC-CTTCTTGACAA 42028 Query 333733 ACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAG 333792 | || |||||||| || || ||||||||| |||| || |||||||||||| Sbjct 42029 ATTCCGACAGATTACCGCGATAACGCTTCAGCTTATAGTTACCCTCATAATGGATAATAT 42088 Query 333793 AGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCT 333852 || || ||| || | || || ||||||||||| ||||| | | | ||| || Sbjct 42089 CAGTACACACATGATCCAAAAATCCAGAGTCGTGTGAGACAATGATCGAAGTCACGGTCT 42148 Query 333853 TAAGGTTGATCAGGTA-TTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTC 333911 | || | ||| || ||| | ||||| ||| || |||| |||||||| || Sbjct 42149 TGAGACCCAACAGATAGTTCTCT-AGCCAGGCCACATTGACCACATCCAGATGGTTAGTA 42207 Query 333912 GGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTC 333971 || ||||| | || || | | || |||| | ||| ||||| || | || || ||| Sbjct 42208 GGTTCGTCCAACAGGAGAATATCGGCATTCATCAACATGGCACGAGCCAAGGCAAGCTTC 42267 Query 333972 ATTTTCCACCCTCCTGAAAGAG 333993 |||||||| || || || |||| Sbjct 42268 ATTTTCCAGCCACCCGAGAGAG 42289 Score = 111 bits (122), Expect = 3e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 332868 TCACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGA 332927 ||||| |||| |||| || ||||| ||||| || | || ||| |||| | ||| | | Sbjct 41158 TCACGATCAAGATAGTTAGTAGGTTCATCCAAGACAAGCATGTGTGGTTTGTTCCACATA 41217 Query 332928 GCAGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGA 332987 || || || |||||||| || | |||||| || ||||| |||||||||||| |||||||| Sbjct 41218 GCTGCACCAATAACCAACTTGACCTTTTGACCACCAGAAAGACCACGAATGTGAGAATGA 41277 Query 332988 GTTGTAAATTCAGGGTCGAGACCAACATTTGCCATATGTTCTTCCACGTTCTTTGCGGTC 333047 | | ||| || || || || ||||| | | | ||| | ||| | | |||||| ||| Sbjct 41278 GAAGCAAACTCGGGCTCAAGTCCAACTTCCTCTAGATGCTTTTCGATTTCCTTTGCCGTC 41337 Query 333048 A 333048 | Sbjct 41338 A 41338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102840236350900