Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1825 143 3e-29 seq2381 127 2e-24 >seq1825 Length=31147 Score = 143 bits (158), Expect = 3e-29 Identities = 404/612 (66%), Gaps = 9/612 (1%) Strand=Plus/Plus Query 114796 ACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTC 114855 ||||| ||| ||||| || | | ||| ||| | |||| | ||| ||| || |||| Sbjct 9275 ACGCTCCATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTC 9334 Query 114856 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 114915 ||| | || ||||| | | ||||||||||| | || ||| ||||| ||||| Sbjct 9335 ATCAGCACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTC 9394 Query 114916 CAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGT 114972 ||||||| || | || ||||| || |||| | || ||||| | | ||||| Sbjct 9395 AAGGTACATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGT 9454 Query 114973 GGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT 115032 | ||||||| || |||||||| || | ||||||| ||| ||||| || || ||| Sbjct 9455 GTCATTAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAAT 9514 Query 115033 ACGAGACTTATTGGCTCTGACATCATGGA-TGTGCATACCAATACCCCCTGCCCACTTTG 115091 ||| | | | | || | |||| || | | ||| | ||| || || || | Sbjct 9515 GTAAGAACCAGAGCCACGGATCTTTTGGAATGAG-ACACCGACACCACCAGCAGCTTTAG 9573 Query 115092 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTT 115150 |||| | || || || | | || | ||||| || ||||| || | || || | Sbjct 9574 AGATACGAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCT 9633 Query 115151 GCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGT 115210 | || |||||| ||||| || | ||| ||| | |||||||| || ||||||||||| ||| Sbjct 9634 G-GACAAGGAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGT 9692 Query 115211 GTCGCGTGGATGAACATACCTTG-GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAAT 115269 || || || |||| ||| | | |||||| |||||| |||| ||| | | Sbjct 9693 GTAGCATGAGTGAA-ATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAG 9751 Query 115270 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAG 115329 |||| || || ||||| | | || ||||||| ||||||||| || ||| | | Sbjct 9752 ATCTTGACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAAT 9811 Query 115330 GATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAA 115389 |||| | || | | ||||||||| ||||| ||||||| |||||| ||| || Sbjct 9812 CTTACCGTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAAGAAACTGAA 9871 Query 115390 GTCATAGTCCCT 115401 ||| || || || Sbjct 9872 GTCGTAATCTCT 9883 Score = 120 bits (132), Expect = 4e-22 Identities = 304/460 (66%), Gaps = 18/460 (4%) Strand=Plus/Plus Query 113592 TTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCG 113651 ||| || ||||| ||||| || ||||| | |||| |||||| ||||| | |||||| | Sbjct 7823 TTGTTCTAAGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAATGCATAG 7882 Query 113652 AGGACAACTTGG-AGAGT---GTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 113707 ||| || ||| | | | ||| | || | || | ||||||| |||||||||| Sbjct 7883 AGGTCAGCTTACCATAATTAGGTTCGGCTGTA----AACAAGTTCATAGATTGGGATTGA 7938 Query 113708 TCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTT-----GATTT 113762 || || || |||||||| || ||||||||||| | || |||| ||||| Sbjct 7939 TCAATAAAAGCACCACGATCAGCAGCCATATCAATAA-----TTGTTCTTTGAGAGATTT 7993 Query 113763 CCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGG 113822 |||| ||||| ||||||| ||||| | |||||| |||||| ||| | ||| | Sbjct 7994 CCCAGACAGTCTTGTAGAGTTTCTTGAGATCATCAGGGATAGTAGGGATTTCTTGTACAC 8053 Query 113823 AGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGA 113882 |||||| | ||| | || ||| | | | |||||||||| ||| | Sbjct 8054 TGCCACCATGAGCAATCATCATATTCTTGAGGTTGTCGCTCCAGAGACCACGCTTGACAA 8113 Query 113883 GATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGAT 113942 |||| | || ||||| | ||||| || || ||||| || || | || Sbjct 8114 GATCGTTCAAAAGATGTTGGTTGACCACTTGGAATTCACCACTCTGGACACGACGGGTAT 8173 Query 113943 AGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGG 114002 |||| || | || || || |||||||| || |||||||||||||||| ||| || Sbjct 8174 AGATGTTACTTGTATAAGGTTCAAAGCATTCTGTGTTACCCAAGATTTGACTGGTACTGG 8233 Query 114003 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 |||| ||||| || || | | ||| |||||| | ||| Sbjct 8234 CTGTAGGCATAGGCGCTAACAAAAGTGAGTTACGAACACC 8273 >seq2381 Length=15399 Score = 127 bits (140), Expect = 2e-24 Identities = 196/274 (72%), Gaps = 7/274 (3%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||| || ||||| |||| ||||| || ||||| || || Sbjct 10910 GCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCA 10969 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | |||||| || | ||||||||| ||||||||||| Sbjct 10970 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATA 11029 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGCGACTTTGTGTCAAA 126225 || || ||| || || |||| | ||||||||||| ||| || || | | | Sbjct 11030 CCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTAC-CAGAG---AT 11085 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||||| | ||||| | ||||| || |||||| || | ||| | ||| || ||||| Sbjct 11086 CCACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAA 11145 Query 126286 GAGTTCCTTCTTTTC-TGATGGATCTTTGATGTA 126318 | || |||||| |||| |||||||||||| Sbjct 11146 CAACATCTCCTTTTCTTGAT-TATCTTTGATGTA 11178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597332588087120