Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2078 116 4e-21 seq2232 107 2e-18 >seq2078 Length=27221 Score = 116 bits (128), Expect = 4e-21 Identities = 161/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || |||||||| || |||||||| |||| | | ||| | || Sbjct 1300 AAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATC 1359 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || ||||| || || |||| | || || || || || ||||| ||||| || || Sbjct 1360 TTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTC 1419 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || |||||||| || || | || |||| || || ||||| | || | ||| Sbjct 1420 TTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGT 1479 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAATAATG 64453 || || || | || || |||||||||||||| ||||| |||| Sbjct 1480 TTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTTAAAAATG 1523 >seq2232 Length=20840 Score = 107 bits (118), Expect = 2e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | || | || ||||||| | |||| Sbjct 539 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCCAACTGC 598 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || ||||||| || || ||||| ||||| || ||||| || ||||| || ||| Sbjct 599 TTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGGATCTTT 658 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||||||| || | | |||| | || || |||| || | ||| ||||| || Sbjct 659 TGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTGCCAGTA 718 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || |||||||| Sbjct 719 AGAGTCTTGACAAAGATTTGCAT 741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| || ||||| || | | | || | ||||| | || Sbjct 767 TGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTGT 826 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || || || ||||| || || || ||||| || ||||| || ||| Sbjct 827 TTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTT 886 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| || ||| | | || || || ||||| | ||| | |||||| || || Sbjct 887 TGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTACCAGTG 946 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAA 64448 | || || |||||||||||||| |||| Sbjct 947 AGGGTCTTAACGAAAATTTGCATGTTAA 974 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| || ||||| || | | | || | ||||| | || Sbjct 311 TGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTGT 370 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || || || ||||| || || || ||||| || ||||| || ||| Sbjct 371 TTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTGGATCTTT 430 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| || ||| | | || || || ||||| | ||| | |||||||| || Sbjct 431 TGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTTGCCAGTA 490 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || ||||| ||||| Sbjct 491 AGAGTCTTAACRAAAATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499627224994160