Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2078 118 8e-22 seq2232 113 3e-20 >seq2078 Length=27221 Score = 118 bits (130), Expect = 8e-22 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| || ||||| ||||| || |||||||| || ||| || || | ||||||| | Sbjct 1309 ATGTAGTGTAGATTCTTTCTGGATGTTGTAGTC--TGATAAAGAGCGGCCATCTTCTAGT 1366 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAA-- 15088 || || || ||| | |||||||| ||||| || |||||| ||||||||||| || Sbjct 1367 TGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATC 1426 Query 15089 TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTAC 15148 |||||| || || |||| || | ||| ||| || || | |||||||||||||| Sbjct 1427 TTTTGC--TTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGTTTTAC 1484 Query 15149 CTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || || || || || ||||||||||||||| ||| Sbjct 1485 CAGTGAGGGTCTTGACGAAAATTTGCATATTTAAAA 1520 Score = 102 bits (112), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| ||||| || |||||||| || ||| | | ||||||||||| Sbjct 1081 ATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTCTAATTG 1140 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAA--TT 15090 |||||| || | || | |||||||||||| |||||| ||||| || || || || Sbjct 1141 TTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTT 1200 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 |||| || || |||| |||| ||| ||| || |||| || || ||||| ||| Sbjct 1201 TTGC--TTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTTGCCT 1258 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| ||||||||| Sbjct 1259 GTGAGTGTCTTCACAAAGATTTGCATA 1285 >seq2232 Length=20840 Score = 113 bits (124), Expect = 3e-20 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || |||||||| || |||| | ||||||| Sbjct 533 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCC 592 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--AC 15085 || || || |||||| | || | ||| |||||||| || || ||||||||||| Sbjct 593 AACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGG 652 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| |||||| |||| |||| ||| ||| || |||||||| ||||||| Sbjct 653 ATCTTTTGC--TTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTT 710 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||| || ||||| ||||||||| Sbjct 711 TGCCAGTAAGAGTCTTGACAAAGATTTGCATA 742 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||||||||| |||||||| || ||||| || ||| | | ||||| Sbjct 760 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 819 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--A 15084 ||||||||| ||||| | || | ||| |||||||| || || ||||||||||| Sbjct 820 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTG 879 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 | |||||| || || | || || | ||| ||| || || || || ||||| Sbjct 880 GATCTTTTGC--TTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTC 937 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || || || || || ||||||||||| || Sbjct 938 TTACCAGTGAGGGTCTTAACGAAAATTTGCATGTT 972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||||||||| |||||||| || ||||| || ||| | | ||||| Sbjct 304 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 363 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--A 15084 ||||||||| ||||| | || | ||| |||||||| || || ||||||||||| Sbjct 364 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTG 423 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 | |||||| || || | || || | ||| ||| || || || || || || Sbjct 424 GATCTTTTGC--TTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTC 481 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || ||||| |||||| Sbjct 482 TTGCCAGTAAGAGTCTTAACRAAAATCTGCATA 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357379743017990