Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2078 114 1e-20 seq2232 91.5 1e-13 >seq2078 Length=27221 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| ||||| | | ||| ||||| || || ||||| || ||||| || || || || Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTC--TG 1115 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || ||| || |||||||| || || | || | || || ||||| || | Sbjct 1116 ATAGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTG 1175 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||||||||||||||| ||||| |||| ||| | | || || || |||| Sbjct 1176 GAATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGA 1235 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | |||||||| || || || || ||||| |||||||| Sbjct 1236 CTTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/216 (70%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA------ 45184 ||| ||||| || || ||||| || ||||| || || || ||| | ||| Sbjct 1303 CACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTC--TGA----TAAAGAGCGGCC 1356 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||| ||||||||| | ||||| ||||| || || || ||||| ||||| || Sbjct 1357 ATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 1416 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| ||||| || | ||| | | || || || || ||||| || |||| Sbjct 1417 GTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAAT 1476 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || ||||||||||| Sbjct 1477 GGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 >seq2232 Length=20840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || |||||||| || || | || | ||||| ||||| || || || ||||| || Sbjct 814 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTT 873 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||| || ||||| |||| || | || | || |||||| || |||||||| | ||| | Sbjct 874 GTCTTGGATCTTTTGCTTGA-CGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGA 932 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||||||||| Sbjct 933 TGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987300787440