Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2381 134 2e-26 seq1825 114 2e-20 >seq2381 Length=15399 Score = 134 bits (148), Expect = 2e-26 Identities = 196/274 (72%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||| || ||||| |||| ||||| || ||||| || ||| Sbjct 10909 AGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACC 10968 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | |||||| || | |||||| |||||||||||||| Sbjct 10969 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGAT 11028 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || || ||| || || |||| | ||||| ||||| ||| | || | | Sbjct 11029 ACCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCG---TTACCAGAGAT 11085 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||| | ||||| | |||||| || |||||| || | ||| | ||| || ||||| Sbjct 11086 CCACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAA 11145 Query 127759 GAGTTCCTTCTTTTC-TGATGGATCTTTGATGTA 127791 | || |||||| |||| |||||||||||| Sbjct 11146 CAACATCTCCTTTTCTTGAT-TATCTTTGATGTA 11178 >seq1825 Length=31147 Score = 114 bits (126), Expect = 2e-20 Identities = 397/611 (65%), Gaps = 9/611 (1%) Strand=Plus/Plus Query 116758 CGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT 116817 |||| ||| ||||| || | | ||| || || |||| | ||| ||| || |||| Sbjct 9276 CGCTCCATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCA 9335 Query 116818 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 116877 ||| | || ||||| | | ||||||||||| | || ||| ||||| ||||| Sbjct 9336 TCAGCACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCA 9395 Query 116878 AGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTT 116934 ||||||| || | || || || || |||| | || ||||| | | || || Sbjct 9396 AGGTACATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTG 9455 Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 116994 | ||||| || |||||||| || | ||||||| ||| ||||| || || ||| Sbjct 9456 TCATTAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATG 9515 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGA-TGTGCATACCAATACCCCCTGCCCACTTTGA 117053 ||| | | | || | |||| || | | ||| | ||| || || || || Sbjct 9516 TAAGAACCAGAGCCACGGATCTTTTGGAATGAG-ACACCGACACCACCAGCAGCTTTAGA 9574 Query 117054 GATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTG 117112 ||| | || || || | | || | ||||| || ||||| || | || || || Sbjct 9575 GATACGAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTG 9634 Query 117113 CGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 117172 || ||||| ||||| || | ||| ||| | |||||||| || ||||||||||| |||| Sbjct 9635 -GACAAGGAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTG 9693 Query 117173 TCGCGTGGATGAACATACCTTG-GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATG 117231 | || || |||| ||| | | |||||| |||||| |||| ||| || | Sbjct 9694 TAGCATGAGTGAA-ATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGA 9752 Query 117232 TCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGG 117291 |||| || || ||||| | | || ||||||| ||||||||| || ||| | | Sbjct 9753 TCTTGACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATC 9812 Query 117292 ATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAG 117351 |||| | || | | ||||||||| ||||| ||||||| |||||| | | ||| Sbjct 9813 TTACCGTTGATCTTGAAGAGGTAACTACGTTCCAATGTCTTGAAACCAAAGAAACTGAAG 9872 Query 117352 TCATAGTCCCT 117362 || || || || Sbjct 9873 TCGTAATCTCT 9883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485619884240